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Mutant Information

Mutant Name	FN833-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN833-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 89582 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 16487634 C-T Hetero INTERGENIC
SBS Chr1 26027887 C-T Hetero INTRON
SBS Chr2 4597414 A-G Homo INTRON
SBS Chr2 4905428 T-A Hetero INTERGENIC
SBS Chr2 6457562 T-C Hetero INTERGENIC
SBS Chr2 27458256 G-A Hetero INTERGENIC
SBS Chr3 955656 G-A Homo INTRON
SBS Chr3 24244207 C-T Hetero INTERGENIC
SBS Chr4 10229160 T-A Hetero INTERGENIC
SBS Chr4 10229170 C-T Hetero INTERGENIC
SBS Chr4 10870400 G-C Hetero INTERGENIC
SBS Chr4 10870401 C-T Hetero INTERGENIC
SBS Chr4 19508558 T-C Homo INTRON
SBS Chr4 20626920 T-C Hetero INTERGENIC
SBS Chr4 36840320 G-C Homo NON_SYNONYMOUS_CODING OsKitaake04g321500
SBS Chr5 17289483 T-A Homo UTR_5_PRIME
SBS Chr5 20384658 C-A Homo INTERGENIC
SBS Chr5 20384659 C-A Homo INTERGENIC
SBS Chr6 3163086 A-T Hetero INTRON
SBS Chr6 14225330 C-A Hetero INTERGENIC
SBS Chr6 22280287 C-T Hetero INTERGENIC
SBS Chr6 29849477 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g279300
SBS Chr7 918355 A-G Hetero INTERGENIC
SBS Chr7 8629322 A-G Homo INTERGENIC
SBS Chr7 9777218 G-A Homo INTERGENIC
SBS Chr7 16241127 G-T Hetero INTERGENIC
SBS Chr7 17297189 G-A Hetero INTERGENIC
SBS Chr7 27174542 T-C Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 8583953 T-C Homo INTERGENIC
SBS Chr8 8733446 G-A Homo INTRON
SBS Chr8 13288927 G-C Hetero INTERGENIC
SBS Chr9 10276250 G-A Hetero INTRON
SBS Chr10 8895226 G-A Hetero INTERGENIC
SBS Chr10 9806740 T-C Homo STOP_LOST OsKitaake10g057300
SBS Chr10 13870556 C-A Hetero INTRON
SBS Chr10 16535416 G-A Homo INTERGENIC
SBS Chr11 3338607 G-A Homo SYNONYMOUS_CODING
SBS Chr11 17340101 T-C Homo INTERGENIC
SBS Chr11 17480923 C-T Homo UTR_5_PRIME

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 809653 809655 2
Deletion Chr2 4430097 4430099 2
Deletion Chr2 4538001 4639000 100999 10
Deletion Chr3 5247541 5247542 1
Deletion Chr5 5893760 5893848 88
Deletion Chr1 7862043 7862045 2
Deletion Chr7 8770256 8770257 1
Deletion Chr10 9806262 9806266 4
Deletion Chr4 10082758 10082760 2 OsKitaake04g054100
Deletion Chr11 12147613 12147615 2
Deletion Chr5 12307790 12307791 1
Deletion Chr9 14888740 14888752 12
Deletion Chr12 19846343 19846345 2
Deletion Chr5 26487696 26487697 1
Deletion Chr5 26507613 26507616 3
Deletion Chr6 28004929 28004931 2
Deletion Chr1 34487080 34487091 11
Deletion Chr3 35224562 35224580 18
Deletion Chr4 36397422 36397439 17

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 3415992 3415995 2 OsKitaake05g041150
Insertion Chr6 5475212 5475215 2
Insertion Chr8 17352396 17352399 2
Insertion Chr9 12579202 12579205 2
Insertion Chr11 13914383 13914386 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 14648389 14978455 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	89582	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	16487634	C-T	Hetero	INTERGENIC
SBS	Chr1	26027887	C-T	Hetero	INTRON
SBS	Chr2	4597414	A-G	Homo	INTRON
SBS	Chr2	4905428	T-A	Hetero	INTERGENIC
SBS	Chr2	6457562	T-C	Hetero	INTERGENIC
SBS	Chr2	27458256	G-A	Hetero	INTERGENIC
SBS	Chr3	955656	G-A	Homo	INTRON
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr4	10229160	T-A	Hetero	INTERGENIC
SBS	Chr4	10229170	C-T	Hetero	INTERGENIC
SBS	Chr4	10870400	G-C	Hetero	INTERGENIC
SBS	Chr4	10870401	C-T	Hetero	INTERGENIC
SBS	Chr4	19508558	T-C	Homo	INTRON
SBS	Chr4	20626920	T-C	Hetero	INTERGENIC
SBS	Chr4	36840320	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g321500
SBS	Chr5	17289483	T-A	Homo	UTR_5_PRIME
SBS	Chr5	20384658	C-A	Homo	INTERGENIC
SBS	Chr5	20384659	C-A	Homo	INTERGENIC
SBS	Chr6	3163086	A-T	Hetero	INTRON
SBS	Chr6	14225330	C-A	Hetero	INTERGENIC
SBS	Chr6	22280287	C-T	Hetero	INTERGENIC
SBS	Chr6	29849477	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g279300
SBS	Chr7	918355	A-G	Hetero	INTERGENIC
SBS	Chr7	8629322	A-G	Homo	INTERGENIC
SBS	Chr7	9777218	G-A	Homo	INTERGENIC
SBS	Chr7	16241127	G-T	Hetero	INTERGENIC
SBS	Chr7	17297189	G-A	Hetero	INTERGENIC
SBS	Chr7	27174542	T-C	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	8583953	T-C	Homo	INTERGENIC
SBS	Chr8	8733446	G-A	Homo	INTRON
SBS	Chr8	13288927	G-C	Hetero	INTERGENIC
SBS	Chr9	10276250	G-A	Hetero	INTRON
SBS	Chr10	8895226	G-A	Hetero	INTERGENIC
SBS	Chr10	9806740	T-C	Homo	STOP_LOST	OsKitaake10g057300
SBS	Chr10	13870556	C-A	Hetero	INTRON
SBS	Chr10	16535416	G-A	Homo	INTERGENIC
SBS	Chr11	3338607	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	17340101	T-C	Homo	INTERGENIC
SBS	Chr11	17480923	C-T	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	809653	809655	2
Deletion	Chr2	4430097	4430099	2
Deletion	Chr2	4538001	4639000	100999	10
Deletion	Chr3	5247541	5247542	1
Deletion	Chr5	5893760	5893848	88
Deletion	Chr1	7862043	7862045	2
Deletion	Chr7	8770256	8770257	1
Deletion	Chr10	9806262	9806266	4
Deletion	Chr4	10082758	10082760	2	OsKitaake04g054100
Deletion	Chr11	12147613	12147615	2
Deletion	Chr5	12307790	12307791	1
Deletion	Chr9	14888740	14888752	12
Deletion	Chr12	19846343	19846345	2
Deletion	Chr5	26487696	26487697	1
Deletion	Chr5	26507613	26507616	3
Deletion	Chr6	28004929	28004931	2
Deletion	Chr1	34487080	34487091	11
Deletion	Chr3	35224562	35224580	18
Deletion	Chr4	36397422	36397439	17

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14648389	14978455	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes