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Mutant Information

Mutant Name	FN836-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN836-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5922720 G-A Hetero INTERGENIC
SBS Chr1 25574634 C-T Hetero INTERGENIC
SBS Chr1 29689193 T-C Hetero INTRON
SBS Chr1 42613073 A-G Hetero INTERGENIC
SBS Chr2 15137590 A-T Hetero INTERGENIC
SBS Chr2 35390423 C-A Homo INTERGENIC
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 16294435 G-A Hetero INTERGENIC
SBS Chr3 21959337 T-C Homo INTERGENIC
SBS Chr3 26427847 G-A Homo INTRON
SBS Chr3 27757149 A-G Homo INTERGENIC
SBS Chr3 31363117 T-C Hetero INTERGENIC
SBS Chr3 37072291 T-C Hetero INTERGENIC
SBS Chr4 8825813 C-T Hetero INTERGENIC
SBS Chr4 10182582 T-C Hetero INTERGENIC
SBS Chr4 13061757 G-T Hetero INTERGENIC
SBS Chr4 20427046 A-G Hetero INTERGENIC
SBS Chr4 21458966 G-A Homo INTERGENIC
SBS Chr5 6446747 C-T Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 18816527 G-A Hetero INTERGENIC
SBS Chr5 24257401 T-C Hetero INTERGENIC
SBS Chr5 29842907 A-T Homo INTERGENIC
SBS Chr6 2549130 T-C Hetero INTERGENIC
SBS Chr6 2964941 G-A Hetero INTRON
SBS Chr6 7100758 C-T Homo INTERGENIC
SBS Chr7 1194242 A-G Hetero UTR_3_PRIME
SBS Chr7 3608064 G-A Homo INTRON
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr7 13969392 T-A Homo INTERGENIC
SBS Chr7 26249149 A-T Hetero INTERGENIC
SBS Chr8 4087084 A-G Hetero INTERGENIC
SBS Chr8 8487523 G-A Hetero INTERGENIC
SBS Chr8 9401287 C-T Hetero INTERGENIC
SBS Chr8 10173024 C-A Hetero INTERGENIC
SBS Chr8 13194496 G-T Hetero INTERGENIC
SBS Chr8 16710364 G-A Hetero INTERGENIC
SBS Chr8 19404422 C-T Hetero INTERGENIC
SBS Chr9 5221999 A-C Hetero INTERGENIC
SBS Chr9 11069759 C-A Hetero INTERGENIC
SBS Chr9 17742671 T-C Hetero INTRON
SBS Chr10 5530636 T-A Homo INTERGENIC
SBS Chr10 6048204 C-G Hetero INTERGENIC
SBS Chr10 14141949 T-C Hetero INTERGENIC
SBS Chr10 22798344 T-A Homo INTERGENIC
SBS Chr11 723288 C-T Hetero INTERGENIC
SBS Chr11 5946430 C-T Homo INTERGENIC
SBS Chr11 15366631 A-C Hetero INTERGENIC
SBS Chr12 13772772 G-T Homo INTERGENIC
SBS Chr12 14053429 G-A Homo INTERGENIC
SBS Chr12 15313146 T-C Hetero INTERGENIC
SBS Chr12 26146369 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2363934 2363949 15
Deletion Chr1 5740001 5832000 91999 10
Deletion Chr10 7184098 7184100 2
Deletion Chr4 11130108 11130131 23
Deletion Chr7 11519767 11519771 4
Deletion Chr7 11902357 11902366 9
Deletion Chr11 14240254 14240274 20
Deletion Chr10 14869028 14869035 7
Deletion Chr12 16628706 16628711 5
Deletion Chr9 17902565 17902572 7
Deletion Chr6 18004215 18004216 1 OsKitaake06g165600
Deletion Chr4 24387218 24387220 2 OsKitaake04g158300
Deletion Chr3 26568293 26568309 16
Deletion Chr3 26576507 26576510 3
Deletion Chr4 27024174 27024180 6
Deletion Chr7 29016326 29016327 1
Deletion Chr1 34428676 34428678 2
Deletion Chr2 35361276 35361286 10
Deletion Chr1 35779751 35779758 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15405455 15405457 1
Insertion Chr2 21226792 21226795 2
Insertion Chr3 14519147 14519150 2
Insertion Chr8 3379517 3379520 2
Insertion Chr1 8263843 8263846 2
Insertion Chr12 26049535 26049537 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 20984593 21373247 OsKitaake04g119100
Inversion Chr4 20984605 21373246 OsKitaake04g119100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5922720	G-A	Hetero	INTERGENIC
SBS	Chr1	25574634	C-T	Hetero	INTERGENIC
SBS	Chr1	29689193	T-C	Hetero	INTRON
SBS	Chr1	42613073	A-G	Hetero	INTERGENIC
SBS	Chr2	15137590	A-T	Hetero	INTERGENIC
SBS	Chr2	35390423	C-A	Homo	INTERGENIC
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	16294435	G-A	Hetero	INTERGENIC
SBS	Chr3	21959337	T-C	Homo	INTERGENIC
SBS	Chr3	26427847	G-A	Homo	INTRON
SBS	Chr3	27757149	A-G	Homo	INTERGENIC
SBS	Chr3	31363117	T-C	Hetero	INTERGENIC
SBS	Chr3	37072291	T-C	Hetero	INTERGENIC
SBS	Chr4	8825813	C-T	Hetero	INTERGENIC
SBS	Chr4	10182582	T-C	Hetero	INTERGENIC
SBS	Chr4	13061757	G-T	Hetero	INTERGENIC
SBS	Chr4	20427046	A-G	Hetero	INTERGENIC
SBS	Chr4	21458966	G-A	Homo	INTERGENIC
SBS	Chr5	6446747	C-T	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	18816527	G-A	Hetero	INTERGENIC
SBS	Chr5	24257401	T-C	Hetero	INTERGENIC
SBS	Chr5	29842907	A-T	Homo	INTERGENIC
SBS	Chr6	2549130	T-C	Hetero	INTERGENIC
SBS	Chr6	2964941	G-A	Hetero	INTRON
SBS	Chr6	7100758	C-T	Homo	INTERGENIC
SBS	Chr7	1194242	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	3608064	G-A	Homo	INTRON
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr7	13969392	T-A	Homo	INTERGENIC
SBS	Chr7	26249149	A-T	Hetero	INTERGENIC
SBS	Chr8	4087084	A-G	Hetero	INTERGENIC
SBS	Chr8	8487523	G-A	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Hetero	INTERGENIC
SBS	Chr8	10173024	C-A	Hetero	INTERGENIC
SBS	Chr8	13194496	G-T	Hetero	INTERGENIC
SBS	Chr8	16710364	G-A	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Hetero	INTERGENIC
SBS	Chr9	5221999	A-C	Hetero	INTERGENIC
SBS	Chr9	11069759	C-A	Hetero	INTERGENIC
SBS	Chr9	17742671	T-C	Hetero	INTRON
SBS	Chr10	5530636	T-A	Homo	INTERGENIC
SBS	Chr10	6048204	C-G	Hetero	INTERGENIC
SBS	Chr10	14141949	T-C	Hetero	INTERGENIC
SBS	Chr10	22798344	T-A	Homo	INTERGENIC
SBS	Chr11	723288	C-T	Hetero	INTERGENIC
SBS	Chr11	5946430	C-T	Homo	INTERGENIC
SBS	Chr11	15366631	A-C	Hetero	INTERGENIC
SBS	Chr12	13772772	G-T	Homo	INTERGENIC
SBS	Chr12	14053429	G-A	Homo	INTERGENIC
SBS	Chr12	15313146	T-C	Hetero	INTERGENIC
SBS	Chr12	26146369	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2363934	2363949	15
Deletion	Chr1	5740001	5832000	91999	10
Deletion	Chr10	7184098	7184100	2
Deletion	Chr4	11130108	11130131	23
Deletion	Chr7	11519767	11519771	4
Deletion	Chr7	11902357	11902366	9
Deletion	Chr11	14240254	14240274	20
Deletion	Chr10	14869028	14869035	7
Deletion	Chr12	16628706	16628711	5
Deletion	Chr9	17902565	17902572	7
Deletion	Chr6	18004215	18004216	1	OsKitaake06g165600
Deletion	Chr4	24387218	24387220	2	OsKitaake04g158300
Deletion	Chr3	26568293	26568309	16
Deletion	Chr3	26576507	26576510	3
Deletion	Chr4	27024174	27024180	6
Deletion	Chr7	29016326	29016327	1
Deletion	Chr1	34428676	34428678	2
Deletion	Chr2	35361276	35361286	10
Deletion	Chr1	35779751	35779758	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	20984593	21373247	OsKitaake04g119100
Inversion	Chr4	20984605	21373246	OsKitaake04g119100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes