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| Mutant Information |
|---|
| Mutant Name | FN838-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN838-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1929056 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 23838183 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 41565355 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4057788 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20648847 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27110222 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 27383263 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 11545464 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 12865838 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19543302 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2669298 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 10694576 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17968896 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31167740 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33508765 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4557775 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 18913767 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 25800838 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 2298074 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 7005149 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18106203 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 21094544 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 5466771 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5466772 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 8999428 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 9021632 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13145000 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 22366063 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr11 | 11503379 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 19085048 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 28303034 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 2856456 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 3427575 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 4070114 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 7762560 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 18825665 | A-C | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 5139001 | 5160000 | 20999 | 2 |
| Deletion | Chr9 | 10993616 | 10993618 | 2 | OsKitaake09g068200 |
| Deletion | Chr6 | 15758741 | 15758897 | 156 | |
| Deletion | Chr3 | 19940071 | 19940072 | 1 | |
| Deletion | Chr1 | 21665110 | 21665112 | 2 | |
| Deletion | Chr2 | 26644001 | 26693000 | 48999 | 7 |
| Deletion | Chr11 | 29073787 | 29073809 | 22 | |
| Deletion | Chr2 | 29119440 | 29119448 | 8 | |
| Deletion | Chr4 | 34012003 | 34012016 | 13 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 19668113 | 19668116 | 2 | |
| Insertion | Chr11 | 9618280 | 9618283 | 2 | |
| Insertion | Chr1 | 24396360 | 24396363 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 8937357 | 9162866 | |
| Inversion | Chr1 | 8937535 | 9162869 |