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Mutant Information

Mutant Name	FN845-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN845-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2006064 C-T Hetero INTERGENIC
SBS Chr1 2379414 A-T Hetero INTERGENIC
SBS Chr1 13336763 C-T Hetero INTERGENIC
SBS Chr1 20656044 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g202100
SBS Chr1 42232345 C-A Hetero INTERGENIC
SBS Chr2 21812037 T-C Homo INTERGENIC
SBS Chr2 28174508 G-T Hetero INTERGENIC
SBS Chr2 28174512 T-A Hetero INTERGENIC
SBS Chr3 11070449 T-A Homo INTERGENIC
SBS Chr3 15186671 T-C Hetero INTERGENIC
SBS Chr4 3799487 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g018401
SBS Chr4 14437362 C-T Homo INTERGENIC
SBS Chr4 24508794 A-T Homo INTERGENIC
SBS Chr4 34482849 T-G Hetero INTRON
SBS Chr5 27562384 T-G Homo INTERGENIC
SBS Chr6 17221084 C-A Hetero INTERGENIC
SBS Chr7 5223909 T-G Hetero INTERGENIC
SBS Chr8 10392345 C-T Hetero INTERGENIC
SBS Chr8 10392346 C-T Hetero INTERGENIC
SBS Chr8 24983551 C-G Hetero INTERGENIC
SBS Chr9 804647 G-C Hetero INTERGENIC
SBS Chr9 19903430 T-G Hetero INTERGENIC
SBS Chr10 20191445 C-T Homo INTERGENIC
SBS Chr11 1847162 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g026000
SBS Chr11 5339903 G-T Homo INTERGENIC
SBS Chr11 13483661 A-T Homo INTERGENIC
SBS Chr11 23641725 T-A Hetero INTERGENIC
SBS Chr12 4613528 G-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5022196 5022198 2
Deletion Chr12 8458583 8458593 10
Deletion Chr11 18145001 18221000 75999 5
Deletion Chr8 19050039 19050040 1
Deletion Chr3 29999298 29999303 5
Deletion Chr2 32324703 32324712 9
Deletion Chr1 40620215 40620223 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43148451 43148454 2
Insertion Chr8 29021133 29021136 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 24273984 24511242
Inversion Chr4 24273987 24511239
Inversion Chr1 30649486 30741224 OsKitaake01g303600
Inversion Chr1 30649487 30674615 OsKitaake01g303600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2006064	C-T	Hetero	INTERGENIC
SBS	Chr1	2379414	A-T	Hetero	INTERGENIC
SBS	Chr1	13336763	C-T	Hetero	INTERGENIC
SBS	Chr1	20656044	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g202100
SBS	Chr1	42232345	C-A	Hetero	INTERGENIC
SBS	Chr2	21812037	T-C	Homo	INTERGENIC
SBS	Chr2	28174508	G-T	Hetero	INTERGENIC
SBS	Chr2	28174512	T-A	Hetero	INTERGENIC
SBS	Chr3	11070449	T-A	Homo	INTERGENIC
SBS	Chr3	15186671	T-C	Hetero	INTERGENIC
SBS	Chr4	3799487	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g018401
SBS	Chr4	14437362	C-T	Homo	INTERGENIC
SBS	Chr4	24508794	A-T	Homo	INTERGENIC
SBS	Chr4	34482849	T-G	Hetero	INTRON
SBS	Chr5	27562384	T-G	Homo	INTERGENIC
SBS	Chr6	17221084	C-A	Hetero	INTERGENIC
SBS	Chr7	5223909	T-G	Hetero	INTERGENIC
SBS	Chr8	10392345	C-T	Hetero	INTERGENIC
SBS	Chr8	10392346	C-T	Hetero	INTERGENIC
SBS	Chr8	24983551	C-G	Hetero	INTERGENIC
SBS	Chr9	804647	G-C	Hetero	INTERGENIC
SBS	Chr9	19903430	T-G	Hetero	INTERGENIC
SBS	Chr10	20191445	C-T	Homo	INTERGENIC
SBS	Chr11	1847162	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g026000
SBS	Chr11	5339903	G-T	Homo	INTERGENIC
SBS	Chr11	13483661	A-T	Homo	INTERGENIC
SBS	Chr11	23641725	T-A	Hetero	INTERGENIC
SBS	Chr12	4613528	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5022196	5022198	2
Deletion	Chr12	8458583	8458593	10
Deletion	Chr11	18145001	18221000	75999	5
Deletion	Chr8	19050039	19050040	1
Deletion	Chr3	29999298	29999303	5
Deletion	Chr2	32324703	32324712	9
Deletion	Chr1	40620215	40620223	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	24273984	24511242
Inversion	Chr4	24273987	24511239
Inversion	Chr1	30649486	30741224	OsKitaake01g303600
Inversion	Chr1	30649487	30674615	OsKitaake01g303600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes