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Mutant Information

Mutant Name	FN846-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN846-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14415334 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 14825672 G-A Homo INTERGENIC
SBS Chr1 24935853 C-T Homo INTERGENIC
SBS Chr1 32913225 G-T Homo INTERGENIC
SBS Chr2 21131937 T-A Hetero INTERGENIC
SBS Chr2 26715706 G-A Hetero INTERGENIC
SBS Chr2 26891024 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 28883274 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 7306189 C-T Homo INTRON
SBS Chr3 8118712 T-C Homo INTERGENIC
SBS Chr3 18048280 C-T Hetero INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 945974 T-A Hetero INTRON
SBS Chr4 4984456 T-G Hetero INTERGENIC
SBS Chr4 13807272 C-G Homo INTERGENIC
SBS Chr4 26010226 A-T Hetero INTERGENIC
SBS Chr5 2219375 A-G Hetero UTR_3_PRIME
SBS Chr5 15126229 C-A Hetero INTERGENIC
SBS Chr5 15466851 G-T Hetero INTERGENIC
SBS Chr5 16318351 C-T Hetero INTRON
SBS Chr5 20431289 A-C Homo INTERGENIC
SBS Chr6 6953026 G-A Homo INTERGENIC
SBS Chr6 9019787 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g108400
SBS Chr6 9673045 T-A Hetero INTERGENIC
SBS Chr6 14897559 C-G Hetero INTERGENIC
SBS Chr7 7757692 C-T Hetero INTERGENIC
SBS Chr7 8588487 A-G Homo INTERGENIC
SBS Chr7 11008497 C-T Homo INTERGENIC
SBS Chr7 12158364 C-T Homo INTERGENIC
SBS Chr7 15433337 C-G Hetero INTRON
SBS Chr7 20405011 G-T Homo INTERGENIC
SBS Chr7 26428584 G-A Homo INTRON
SBS Chr8 1331654 A-G Hetero INTERGENIC
SBS Chr8 1365406 A-T Hetero INTERGENIC
SBS Chr8 1698676 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g021800
SBS Chr8 14001054 C-A Hetero INTERGENIC
SBS Chr9 3907507 C-T Hetero INTERGENIC
SBS Chr9 12925558 G-A Homo INTERGENIC
SBS Chr10 338622 G-A Hetero INTERGENIC
SBS Chr10 14660734 C-T Hetero INTERGENIC
SBS Chr10 15530240 C-T Hetero INTERGENIC
SBS Chr11 1763058 G-A Hetero INTERGENIC
SBS Chr11 14724717 A-G Hetero INTERGENIC
SBS Chr11 25709872 C-A Homo INTERGENIC
SBS Chr12 4553896 A-C Hetero INTERGENIC
SBS Chr12 10985577 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 161245 161246 1
Deletion Chr7 168281 168283 2
Deletion Chr6 3268730 3268739 9
Deletion Chr9 4628911 4629084 173
Deletion Chr5 4945567 4945570 3
Deletion Chr4 13733001 13912000 178999 4
Deletion Chr2 19052026 19052032 6
Deletion Chr6 19260001 19538000 277999 13
Deletion Chr3 22461585 22461756 171
Deletion Chr4 32709422 32709425 3 OsKitaake04g263400

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1389524 1389526 1
Insertion Chr1 29077620 29077624 3
Insertion Chr4 7483059 7483064 4
Insertion Chr4 34693327 34693330 2
Insertion Chr5 14569030 14569033 2
Insertion Chr5 27717863 27717866 2
Insertion Chr9 7344810 7344813 2
Insertion Chr11 10035939 10035942 2
Insertion Chr4 18215924 18215926 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 27352602 27668006 OsKitaake06g250400
Inversion Chr6 27352628 27668020 OsKitaake06g250400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14415334	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14825672	G-A	Homo	INTERGENIC
SBS	Chr1	24935853	C-T	Homo	INTERGENIC
SBS	Chr1	32913225	G-T	Homo	INTERGENIC
SBS	Chr2	21131937	T-A	Hetero	INTERGENIC
SBS	Chr2	26715706	G-A	Hetero	INTERGENIC
SBS	Chr2	26891024	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	28883274	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	7306189	C-T	Homo	INTRON
SBS	Chr3	8118712	T-C	Homo	INTERGENIC
SBS	Chr3	18048280	C-T	Hetero	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	945974	T-A	Hetero	INTRON
SBS	Chr4	4984456	T-G	Hetero	INTERGENIC
SBS	Chr4	13807272	C-G	Homo	INTERGENIC
SBS	Chr4	26010226	A-T	Hetero	INTERGENIC
SBS	Chr5	2219375	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	15126229	C-A	Hetero	INTERGENIC
SBS	Chr5	15466851	G-T	Hetero	INTERGENIC
SBS	Chr5	16318351	C-T	Hetero	INTRON
SBS	Chr5	20431289	A-C	Homo	INTERGENIC
SBS	Chr6	6953026	G-A	Homo	INTERGENIC
SBS	Chr6	9019787	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g108400
SBS	Chr6	9673045	T-A	Hetero	INTERGENIC
SBS	Chr6	14897559	C-G	Hetero	INTERGENIC
SBS	Chr7	7757692	C-T	Hetero	INTERGENIC
SBS	Chr7	8588487	A-G	Homo	INTERGENIC
SBS	Chr7	11008497	C-T	Homo	INTERGENIC
SBS	Chr7	12158364	C-T	Homo	INTERGENIC
SBS	Chr7	15433337	C-G	Hetero	INTRON
SBS	Chr7	20405011	G-T	Homo	INTERGENIC
SBS	Chr7	26428584	G-A	Homo	INTRON
SBS	Chr8	1331654	A-G	Hetero	INTERGENIC
SBS	Chr8	1365406	A-T	Hetero	INTERGENIC
SBS	Chr8	1698676	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g021800
SBS	Chr8	14001054	C-A	Hetero	INTERGENIC
SBS	Chr9	3907507	C-T	Hetero	INTERGENIC
SBS	Chr9	12925558	G-A	Homo	INTERGENIC
SBS	Chr10	338622	G-A	Hetero	INTERGENIC
SBS	Chr10	14660734	C-T	Hetero	INTERGENIC
SBS	Chr10	15530240	C-T	Hetero	INTERGENIC
SBS	Chr11	1763058	G-A	Hetero	INTERGENIC
SBS	Chr11	14724717	A-G	Hetero	INTERGENIC
SBS	Chr11	25709872	C-A	Homo	INTERGENIC
SBS	Chr12	4553896	A-C	Hetero	INTERGENIC
SBS	Chr12	10985577	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	161245	161246	1
Deletion	Chr7	168281	168283	2
Deletion	Chr6	3268730	3268739	9
Deletion	Chr9	4628911	4629084	173
Deletion	Chr5	4945567	4945570	3
Deletion	Chr4	13733001	13912000	178999	4
Deletion	Chr2	19052026	19052032	6
Deletion	Chr6	19260001	19538000	277999	13
Deletion	Chr3	22461585	22461756	171
Deletion	Chr4	32709422	32709425	3	OsKitaake04g263400

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	27352602	27668006	OsKitaake06g250400
Inversion	Chr6	27352628	27668020	OsKitaake06g250400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes