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Mutant Information

Mutant Name	FN848-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN848-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15708761 A-G Hetero INTERGENIC
SBS Chr1 31166522 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g311300
SBS Chr1 38646625 C-T Hetero INTERGENIC
SBS Chr2 228411 G-A Hetero INTERGENIC
SBS Chr2 14844904 G-A Hetero INTERGENIC
SBS Chr2 23785766 A-T Hetero INTERGENIC
SBS Chr2 34025239 T-G Homo INTRON
SBS Chr3 8122521 T-C Homo INTERGENIC
SBS Chr3 23866020 T-G Hetero INTERGENIC
SBS Chr4 9653581 T-C Hetero INTERGENIC
SBS Chr4 13509779 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g064700
SBS Chr4 14716936 C-T Homo INTERGENIC
SBS Chr4 19113814 C-T Hetero INTERGENIC
SBS Chr5 7691151 A-G Hetero INTERGENIC
SBS Chr5 10258765 C-T Homo INTERGENIC
SBS Chr5 24026511 A-C Hetero INTERGENIC
SBS Chr6 14912305 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Hetero INTRON
SBS Chr6 18776249 C-T Hetero INTRON
SBS Chr6 30784228 G-A Hetero INTERGENIC
SBS Chr6 30784229 T-A Hetero INTERGENIC
SBS Chr7 7202170 T-G Homo INTERGENIC
SBS Chr7 9783657 C-T Hetero INTERGENIC
SBS Chr7 9783664 G-A Hetero INTERGENIC
SBS Chr7 24535158 A-T Hetero INTRON
SBS Chr8 5346412 T-C Homo INTERGENIC
SBS Chr8 6520603 G-A Homo INTERGENIC
SBS Chr9 18403228 C-A Hetero INTERGENIC
SBS Chr10 3568632 T-C Hetero INTERGENIC
SBS Chr10 14924785 A-T Hetero INTERGENIC
SBS Chr11 5720441 A-G Homo INTERGENIC
SBS Chr11 16240564 A-G Homo INTERGENIC
SBS Chr11 25407772 G-A Hetero INTERGENIC
SBS Chr11 28816115 C-G Hetero INTERGENIC
SBS Chr12 4234424 T-C Hetero INTERGENIC
SBS Chr12 16082633 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 149480 149500 20
Deletion Chr4 4008181 4008200 19
Deletion Chr3 5322822 5322836 14
Deletion Chr6 8797435 8797437 2
Deletion Chr10 10203767 10203877 110
Deletion Chr11 10787711 10787821 110
Deletion Chr5 12180233 12180239 6
Deletion Chr4 16601768 16601771 3
Deletion Chr11 17906860 17906863 3
Deletion Chr3 19806098 19806107 9
Deletion Chr3 22147106 22147107 1
Deletion Chr5 30030191 30030194 3
Deletion Chr1 44068950 44068952 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36466125 36466128 2
Insertion Chr5 318334 318337 2
Insertion Chr10 11980450 11980453 2
Insertion Chr7 21013889 21013891 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 15553155 15872410
Inversion Chr1 40249231 40310775 OsKitaake01g437600
Inversion Chr1 40249568 40310784 OsKitaake01g437600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 8168184 Chr1 40249560
Translocation Chr6 8168212 Chr1 40249239

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15708761	A-G	Hetero	INTERGENIC
SBS	Chr1	31166522	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g311300
SBS	Chr1	38646625	C-T	Hetero	INTERGENIC
SBS	Chr2	228411	G-A	Hetero	INTERGENIC
SBS	Chr2	14844904	G-A	Hetero	INTERGENIC
SBS	Chr2	23785766	A-T	Hetero	INTERGENIC
SBS	Chr2	34025239	T-G	Homo	INTRON
SBS	Chr3	8122521	T-C	Homo	INTERGENIC
SBS	Chr3	23866020	T-G	Hetero	INTERGENIC
SBS	Chr4	9653581	T-C	Hetero	INTERGENIC
SBS	Chr4	13509779	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g064700
SBS	Chr4	14716936	C-T	Homo	INTERGENIC
SBS	Chr4	19113814	C-T	Hetero	INTERGENIC
SBS	Chr5	7691151	A-G	Hetero	INTERGENIC
SBS	Chr5	10258765	C-T	Homo	INTERGENIC
SBS	Chr5	24026511	A-C	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Hetero	INTRON
SBS	Chr6	18776249	C-T	Hetero	INTRON
SBS	Chr6	30784228	G-A	Hetero	INTERGENIC
SBS	Chr6	30784229	T-A	Hetero	INTERGENIC
SBS	Chr7	7202170	T-G	Homo	INTERGENIC
SBS	Chr7	9783657	C-T	Hetero	INTERGENIC
SBS	Chr7	9783664	G-A	Hetero	INTERGENIC
SBS	Chr7	24535158	A-T	Hetero	INTRON
SBS	Chr8	5346412	T-C	Homo	INTERGENIC
SBS	Chr8	6520603	G-A	Homo	INTERGENIC
SBS	Chr9	18403228	C-A	Hetero	INTERGENIC
SBS	Chr10	3568632	T-C	Hetero	INTERGENIC
SBS	Chr10	14924785	A-T	Hetero	INTERGENIC
SBS	Chr11	5720441	A-G	Homo	INTERGENIC
SBS	Chr11	16240564	A-G	Homo	INTERGENIC
SBS	Chr11	25407772	G-A	Hetero	INTERGENIC
SBS	Chr11	28816115	C-G	Hetero	INTERGENIC
SBS	Chr12	4234424	T-C	Hetero	INTERGENIC
SBS	Chr12	16082633	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	149480	149500	20
Deletion	Chr4	4008181	4008200	19
Deletion	Chr3	5322822	5322836	14
Deletion	Chr6	8797435	8797437	2
Deletion	Chr10	10203767	10203877	110
Deletion	Chr11	10787711	10787821	110
Deletion	Chr5	12180233	12180239	6
Deletion	Chr4	16601768	16601771	3
Deletion	Chr11	17906860	17906863	3
Deletion	Chr3	19806098	19806107	9
Deletion	Chr3	22147106	22147107	1
Deletion	Chr5	30030191	30030194	3
Deletion	Chr1	44068950	44068952	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	15553155	15872410
Inversion	Chr1	40249231	40310775	OsKitaake01g437600
Inversion	Chr1	40249568	40310784	OsKitaake01g437600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes