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Mutant Information

Mutant Name	FN849-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN849-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4485579 C-T Homo SYNONYMOUS_CODING
SBS Chr1 12917071 C-G Homo INTERGENIC
SBS Chr2 6610225 C-G Homo INTERGENIC
SBS Chr2 13559529 G-A Homo INTERGENIC
SBS Chr2 16170953 C-G Hetero INTERGENIC
SBS Chr2 30107206 G-C Hetero INTERGENIC
SBS Chr2 34808161 G-A Hetero INTERGENIC
SBS Chr2 36209162 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g382800
SBS Chr3 2770133 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g038800
SBS Chr3 4743543 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g068700
SBS Chr3 10877858 A-T Hetero INTERGENIC
SBS Chr3 14476240 C-T Hetero INTERGENIC
SBS Chr3 20557777 A-T Hetero INTERGENIC
SBS Chr3 34203540 T-C Hetero INTERGENIC
SBS Chr4 1528040 C-T Homo INTERGENIC
SBS Chr4 34810915 A-C Hetero INTERGENIC
SBS Chr5 6716440 C-T Hetero INTERGENIC
SBS Chr5 17654010 G-A Homo INTERGENIC
SBS Chr5 26220950 C-A Homo INTERGENIC
SBS Chr6 22996732 C-T Hetero INTERGENIC
SBS Chr7 9111737 A-C Hetero INTERGENIC
SBS Chr7 20727951 C-T Homo INTERGENIC
SBS Chr7 22606620 T-A Homo INTERGENIC
SBS Chr7 23567091 A-T Homo INTERGENIC
SBS Chr8 13439064 C-A Hetero INTERGENIC
SBS Chr9 14336729 C-T Homo INTERGENIC
SBS Chr9 19050566 C-T Hetero INTERGENIC
SBS Chr11 2039643 A-T Hetero INTRON
SBS Chr11 6558926 C-G Hetero INTERGENIC
SBS Chr11 16547341 T-A Homo INTERGENIC
SBS Chr11 27913093 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g228600

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 236934 236936 2
Deletion Chr8 440316 440329 13
Deletion Chr4 2463010 2463011 1
Deletion Chr8 4073615 4073617 2
Deletion Chr12 4238556 4238557 1 OsKitaake12g057700
Deletion Chr7 8466643 8466644 1
Deletion Chr12 9429456 9429471 15
Deletion Chr3 9582169 9582170 1
Deletion Chr6 15696577 15696583 6
Deletion Chr12 17170716 17170717 1 OsKitaake12g126600
Deletion Chr5 17652357 17652372 15
Deletion Chr12 18026317 18026321 4
Deletion Chr1 19461106 19461109 3
Deletion Chr3 20147989 20147992 3
Deletion Chr10 20950567 20950568 1 OsKitaake10g161800
Deletion Chr7 22605419 22605429 10
Deletion Chr5 25104997 25104999 2
Deletion Chr1 30047677 30047681 4
Deletion Chr3 30756082 30756088 6

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23767100 23767104 3
Insertion Chr4 20490968 20490971 2
Insertion Chr4 30058269 30058272 2
Insertion Chr6 7054930 7054933 2
Insertion Chr4 11077459 11077461 1
Insertion Chr5 12633210 12633212 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 10123610 10582969 2
Inversion Chr2 10123611 10582971 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4485579	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	12917071	C-G	Homo	INTERGENIC
SBS	Chr2	6610225	C-G	Homo	INTERGENIC
SBS	Chr2	13559529	G-A	Homo	INTERGENIC
SBS	Chr2	16170953	C-G	Hetero	INTERGENIC
SBS	Chr2	30107206	G-C	Hetero	INTERGENIC
SBS	Chr2	34808161	G-A	Hetero	INTERGENIC
SBS	Chr2	36209162	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g382800
SBS	Chr3	2770133	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g038800
SBS	Chr3	4743543	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g068700
SBS	Chr3	10877858	A-T	Hetero	INTERGENIC
SBS	Chr3	14476240	C-T	Hetero	INTERGENIC
SBS	Chr3	20557777	A-T	Hetero	INTERGENIC
SBS	Chr3	34203540	T-C	Hetero	INTERGENIC
SBS	Chr4	1528040	C-T	Homo	INTERGENIC
SBS	Chr4	34810915	A-C	Hetero	INTERGENIC
SBS	Chr5	6716440	C-T	Hetero	INTERGENIC
SBS	Chr5	17654010	G-A	Homo	INTERGENIC
SBS	Chr5	26220950	C-A	Homo	INTERGENIC
SBS	Chr6	22996732	C-T	Hetero	INTERGENIC
SBS	Chr7	9111737	A-C	Hetero	INTERGENIC
SBS	Chr7	20727951	C-T	Homo	INTERGENIC
SBS	Chr7	22606620	T-A	Homo	INTERGENIC
SBS	Chr7	23567091	A-T	Homo	INTERGENIC
SBS	Chr8	13439064	C-A	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Homo	INTERGENIC
SBS	Chr9	19050566	C-T	Hetero	INTERGENIC
SBS	Chr11	2039643	A-T	Hetero	INTRON
SBS	Chr11	6558926	C-G	Hetero	INTERGENIC
SBS	Chr11	16547341	T-A	Homo	INTERGENIC
SBS	Chr11	27913093	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g228600

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	236934	236936	2
Deletion	Chr8	440316	440329	13
Deletion	Chr4	2463010	2463011	1
Deletion	Chr8	4073615	4073617	2
Deletion	Chr12	4238556	4238557	1	OsKitaake12g057700
Deletion	Chr7	8466643	8466644	1
Deletion	Chr12	9429456	9429471	15
Deletion	Chr3	9582169	9582170	1
Deletion	Chr6	15696577	15696583	6
Deletion	Chr12	17170716	17170717	1	OsKitaake12g126600
Deletion	Chr5	17652357	17652372	15
Deletion	Chr12	18026317	18026321	4
Deletion	Chr1	19461106	19461109	3
Deletion	Chr3	20147989	20147992	3
Deletion	Chr10	20950567	20950568	1	OsKitaake10g161800
Deletion	Chr7	22605419	22605429	10
Deletion	Chr5	25104997	25104999	2
Deletion	Chr1	30047677	30047681	4
Deletion	Chr3	30756082	30756088	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	10123610	10582969	2
Inversion	Chr2	10123611	10582971	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes