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Mutant Information

Mutant Name	FN850-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN850-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27354553 A-G Hetero INTRON
SBS Chr1 38975584 G-T Hetero INTERGENIC
SBS Chr2 7508558 T-A Homo INTERGENIC
SBS Chr2 8849311 C-A Hetero INTRON
SBS Chr2 26908321 C-T Hetero INTERGENIC
SBS Chr2 28440231 T-C Hetero INTERGENIC
SBS Chr3 26257742 G-A Hetero INTERGENIC
SBS Chr4 3274573 A-G Hetero INTERGENIC
SBS Chr4 7110643 G-A Hetero INTERGENIC
SBS Chr4 14565645 G-A Hetero INTERGENIC
SBS Chr5 15914070 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g122200
SBS Chr5 18216979 A-G Homo INTRON
SBS Chr6 11559384 C-A Hetero INTERGENIC
SBS Chr6 29688788 G-A Homo UTR_5_PRIME
SBS Chr7 23175734 T-C Hetero START_GAINED
SBS Chr8 4468805 T-A Hetero INTRON
SBS Chr8 8310655 A-C Homo INTERGENIC
SBS Chr8 15090655 G-A Hetero INTERGENIC
SBS Chr9 4186778 C-G Hetero INTERGENIC
SBS Chr9 12659334 T-G Homo INTERGENIC
SBS Chr10 2412514 T-G Hetero INTERGENIC
SBS Chr10 8958535 T-A Hetero INTERGENIC
SBS Chr10 20662753 C-T Hetero INTERGENIC
SBS Chr10 23242567 C-T Hetero INTERGENIC
SBS Chr11 3299644 C-T Hetero INTERGENIC
SBS Chr11 17942657 G-A Homo INTRON
SBS Chr11 28954010 G-A Hetero INTERGENIC
SBS Chr12 9318009 C-G Homo INTERGENIC
SBS Chr12 16554796 C-A Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 5859001 5955000 95999 14
Deletion Chr10 8269928 8269930 2
Deletion Chr10 15113581 15113589 8
Deletion Chr11 20992588 20992602 14
Deletion Chr6 21357648 21357654 6
Deletion Chr7 24266642 24266646 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 7318774 7318777 2
Insertion Chr7 28346703 28346706 2
Insertion Chr8 19034627 19034630 2
Insertion Chr11 5879372 5879375 2
Insertion Chr12 13511445 13511448 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 19802697 20322586
Inversion Chr4 19802764 20322600
Inversion Chr4 22856029 23177073
Inversion Chr4 22856063 23177092

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 552592 Chr4 6340262 OsKitaake12g006800
Translocation Chr6 9134047 Chr4 6340613 OsKitaake06g109600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27354553	A-G	Hetero	INTRON
SBS	Chr1	38975584	G-T	Hetero	INTERGENIC
SBS	Chr2	7508558	T-A	Homo	INTERGENIC
SBS	Chr2	8849311	C-A	Hetero	INTRON
SBS	Chr2	26908321	C-T	Hetero	INTERGENIC
SBS	Chr2	28440231	T-C	Hetero	INTERGENIC
SBS	Chr3	26257742	G-A	Hetero	INTERGENIC
SBS	Chr4	3274573	A-G	Hetero	INTERGENIC
SBS	Chr4	7110643	G-A	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Hetero	INTERGENIC
SBS	Chr5	15914070	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g122200
SBS	Chr5	18216979	A-G	Homo	INTRON
SBS	Chr6	11559384	C-A	Hetero	INTERGENIC
SBS	Chr6	29688788	G-A	Homo	UTR_5_PRIME
SBS	Chr7	23175734	T-C	Hetero	START_GAINED
SBS	Chr8	4468805	T-A	Hetero	INTRON
SBS	Chr8	8310655	A-C	Homo	INTERGENIC
SBS	Chr8	15090655	G-A	Hetero	INTERGENIC
SBS	Chr9	4186778	C-G	Hetero	INTERGENIC
SBS	Chr9	12659334	T-G	Homo	INTERGENIC
SBS	Chr10	2412514	T-G	Hetero	INTERGENIC
SBS	Chr10	8958535	T-A	Hetero	INTERGENIC
SBS	Chr10	20662753	C-T	Hetero	INTERGENIC
SBS	Chr10	23242567	C-T	Hetero	INTERGENIC
SBS	Chr11	3299644	C-T	Hetero	INTERGENIC
SBS	Chr11	17942657	G-A	Homo	INTRON
SBS	Chr11	28954010	G-A	Hetero	INTERGENIC
SBS	Chr12	9318009	C-G	Homo	INTERGENIC
SBS	Chr12	16554796	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	5859001	5955000	95999	14
Deletion	Chr10	8269928	8269930	2
Deletion	Chr10	15113581	15113589	8
Deletion	Chr11	20992588	20992602	14
Deletion	Chr6	21357648	21357654	6
Deletion	Chr7	24266642	24266646	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19802697	20322586
Inversion	Chr4	19802764	20322600
Inversion	Chr4	22856029	23177073
Inversion	Chr4	22856063	23177092

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes