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Mutant Information

Mutant Name	FN851-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN851-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17046612 C-T Hetero INTERGENIC
SBS Chr1 21911773 C-T Homo INTERGENIC
SBS Chr1 29932961 G-T Hetero INTERGENIC
SBS Chr1 33772528 T-G Hetero INTERGENIC
SBS Chr2 3087379 G-A Hetero INTERGENIC
SBS Chr2 24200523 C-G Homo INTERGENIC
SBS Chr2 32459301 T-A Homo INTERGENIC
SBS Chr2 32459304 G-T Homo INTERGENIC
SBS Chr3 24315499 G-A Homo UTR_3_PRIME
SBS Chr3 24315500 G-A Homo UTR_3_PRIME
SBS Chr3 26978286 C-T Hetero INTERGENIC
SBS Chr3 28605198 T-C Homo INTRON
SBS Chr4 565067 A-T Hetero INTERGENIC
SBS Chr4 744651 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g006000
SBS Chr4 9059719 A-G Hetero INTERGENIC
SBS Chr4 20475681 G-A Hetero INTERGENIC
SBS Chr5 8779612 C-T Hetero INTERGENIC
SBS Chr5 16755402 C-T Hetero INTERGENIC
SBS Chr5 17647260 T-A Hetero INTERGENIC
SBS Chr5 28306263 A-G Homo INTERGENIC
SBS Chr6 115242 T-A Homo INTERGENIC
SBS Chr6 115243 G-T Homo INTERGENIC
SBS Chr6 24377183 G-T Homo INTERGENIC
SBS Chr6 25323534 C-T Homo INTERGENIC
SBS Chr7 2035817 T-A Hetero INTERGENIC
SBS Chr8 7670418 A-G Hetero INTERGENIC
SBS Chr9 13569410 G-C Hetero SYNONYMOUS_CODING
SBS Chr9 17353547 C-T Hetero INTERGENIC
SBS Chr9 22316910 A-T Hetero INTERGENIC
SBS Chr10 9939700 T-C Hetero INTERGENIC
SBS Chr11 431882 C-T Hetero INTERGENIC
SBS Chr11 1072572 A-T Hetero INTERGENIC
SBS Chr11 22013072 A-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5255001 5285000 29999 2
Deletion Chr7 6196017 6196019 2
Deletion Chr6 6707809 6707823 14
Deletion Chr10 11931739 11931744 5
Deletion Chr6 15981001 16017000 35999 OsKitaake06g154000
Deletion Chr6 16021001 16152000 130999 11
Deletion Chr1 20358001 20450000 91999 3
Deletion Chr9 21154001 21164000 9999 2
Deletion Chr4 23135228 23135230 2
Deletion Chr3 24368092 24368096 4
Deletion Chr6 24501263 24501276 13
Deletion Chr7 28443733 28443734 1
Deletion Chr4 29115759 29115760 1
Deletion Chr4 31274842 31274848 6 OsKitaake04g244300
Deletion Chr1 40149246 40149266 20

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32863399 32863401 1 OsKitaake01g334100
Insertion Chr6 22816774 22816777 2
Insertion Chr8 1207206 1207209 2
Insertion Chr10 13525053 13525056 2
Insertion Chr12 4326395 4326398 2
Insertion Chr3 26310606 26310609 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 26717175 27625072
Inversion Chr5 26717183 27625085

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17046612	C-T	Hetero	INTERGENIC
SBS	Chr1	21911773	C-T	Homo	INTERGENIC
SBS	Chr1	29932961	G-T	Hetero	INTERGENIC
SBS	Chr1	33772528	T-G	Hetero	INTERGENIC
SBS	Chr2	3087379	G-A	Hetero	INTERGENIC
SBS	Chr2	24200523	C-G	Homo	INTERGENIC
SBS	Chr2	32459301	T-A	Homo	INTERGENIC
SBS	Chr2	32459304	G-T	Homo	INTERGENIC
SBS	Chr3	24315499	G-A	Homo	UTR_3_PRIME
SBS	Chr3	24315500	G-A	Homo	UTR_3_PRIME
SBS	Chr3	26978286	C-T	Hetero	INTERGENIC
SBS	Chr3	28605198	T-C	Homo	INTRON
SBS	Chr4	565067	A-T	Hetero	INTERGENIC
SBS	Chr4	744651	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g006000
SBS	Chr4	9059719	A-G	Hetero	INTERGENIC
SBS	Chr4	20475681	G-A	Hetero	INTERGENIC
SBS	Chr5	8779612	C-T	Hetero	INTERGENIC
SBS	Chr5	16755402	C-T	Hetero	INTERGENIC
SBS	Chr5	17647260	T-A	Hetero	INTERGENIC
SBS	Chr5	28306263	A-G	Homo	INTERGENIC
SBS	Chr6	115242	T-A	Homo	INTERGENIC
SBS	Chr6	115243	G-T	Homo	INTERGENIC
SBS	Chr6	24377183	G-T	Homo	INTERGENIC
SBS	Chr6	25323534	C-T	Homo	INTERGENIC
SBS	Chr7	2035817	T-A	Hetero	INTERGENIC
SBS	Chr8	7670418	A-G	Hetero	INTERGENIC
SBS	Chr9	13569410	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17353547	C-T	Hetero	INTERGENIC
SBS	Chr9	22316910	A-T	Hetero	INTERGENIC
SBS	Chr10	9939700	T-C	Hetero	INTERGENIC
SBS	Chr11	431882	C-T	Hetero	INTERGENIC
SBS	Chr11	1072572	A-T	Hetero	INTERGENIC
SBS	Chr11	22013072	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5255001	5285000	29999	2
Deletion	Chr7	6196017	6196019	2
Deletion	Chr6	6707809	6707823	14
Deletion	Chr10	11931739	11931744	5
Deletion	Chr6	15981001	16017000	35999	OsKitaake06g154000
Deletion	Chr6	16021001	16152000	130999	11
Deletion	Chr1	20358001	20450000	91999	3
Deletion	Chr9	21154001	21164000	9999	2
Deletion	Chr4	23135228	23135230	2
Deletion	Chr3	24368092	24368096	4
Deletion	Chr6	24501263	24501276	13
Deletion	Chr7	28443733	28443734	1
Deletion	Chr4	29115759	29115760	1
Deletion	Chr4	31274842	31274848	6	OsKitaake04g244300
Deletion	Chr1	40149246	40149266	20

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	26717175	27625072
Inversion	Chr5	26717183	27625085

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes