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Mutant Information

Mutant Name	FN852-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN852-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6676203 A-T Hetero INTRON
SBS Chr1 12695932 G-A Hetero INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr1 36111495 G-A Homo INTERGENIC
SBS Chr1 40849753 C-A Homo INTERGENIC
SBS Chr2 21529070 C-G Homo INTERGENIC
SBS Chr3 7714224 C-T Homo INTERGENIC
SBS Chr3 17175761 G-A Hetero INTERGENIC
SBS Chr3 23203418 C-T Homo INTERGENIC
SBS Chr3 35339544 T-G Hetero INTRON
SBS Chr4 5363095 G-A Hetero INTERGENIC
SBS Chr4 19389432 T-C Hetero INTERGENIC
SBS Chr4 22145614 C-A Hetero INTERGENIC
SBS Chr4 24625698 C-T Hetero INTERGENIC
SBS Chr5 5766519 G-A Hetero UTR_3_PRIME
SBS Chr5 18948487 G-A Hetero INTRON
SBS Chr5 21197377 G-A Hetero INTERGENIC
SBS Chr5 24564765 A-T Hetero UTR_3_PRIME
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 16407082 T-A Homo INTERGENIC
SBS Chr7 15915157 G-A Hetero INTERGENIC
SBS Chr7 27463196 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 28185796 G-A Hetero INTERGENIC
SBS Chr8 11534184 C-T Hetero INTERGENIC
SBS Chr8 13987214 T-A Hetero INTERGENIC
SBS Chr8 16483553 C-G Hetero INTERGENIC
SBS Chr9 10903984 C-T Homo INTERGENIC
SBS Chr10 22662265 T-C Hetero INTERGENIC
SBS Chr11 5368945 A-G Homo INTERGENIC
SBS Chr11 17848592 G-A Homo INTERGENIC
SBS Chr11 24452116 G-A Hetero INTERGENIC
SBS Chr12 4949658 G-A Hetero INTERGENIC
SBS Chr12 6791851 T-C Hetero INTERGENIC
SBS Chr12 14900296 A-T Hetero INTERGENIC
SBS Chr12 24432954 A-G Hetero INTERGENIC
SBS Chr12 26885425 T-C Hetero UTR_5_PRIME
SBS Chr12 26885428 C-A Hetero UTR_5_PRIME

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2375276 2375290 14
Deletion Chr3 2382740 2382742 2
Deletion Chr4 2405314 2405316 2
Deletion Chr12 7480192 7480193 1
Deletion Chr2 11736567 11736568 1
Deletion Chr7 12417588 12417590 2 OsKitaake07g111000
Deletion Chr9 13346169 13346170 1 OsKitaake09g088800
Deletion Chr12 15219926 15219927 1
Deletion Chr9 16527806 16527807 1
Deletion Chr7 17239920 17239921 1
Deletion Chr8 24824288 24824292 4
Deletion Chr6 25385837 25385839 2 OsKitaake06g225600
Deletion Chr8 26977001 27305000 327999 55
Deletion Chr1 36048233 36048237 4
Deletion Chr1 40236002 40236009 7
Deletion Chr1 41616103 41616105 2 OsKitaake01g454500

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3282644 3282647 2
Insertion Chr3 4499896 4499899 2
Insertion Chr6 8532228 8532231 2
Insertion Chr6 24846096 24846099 2
Insertion Chr8 28456327 28456330 2
Insertion Chr12 10831456 10831462 5

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7697989 7746459 2
Inversion Chr1 7702741 7746496 OsKitaake01g097100
Inversion Chr2 21277405 21522133 2
Inversion Chr2 21277415 21522150 2
Inversion Chr11 27121570 27551262 OsKitaake11g221300
Inversion Chr11 27551276 27685037

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11388418 Chr1 40750579
Translocation Chr7 11388520 Chr1 40751311
Translocation Chr12 13548743 Chr11 27125676
Translocation Chr12 13548750 Chr11 27121585 OsKitaake11g221300
Translocation Chr5 25936282 Chr3 16851198

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6676203	A-T	Hetero	INTRON
SBS	Chr1	12695932	G-A	Hetero	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr1	36111495	G-A	Homo	INTERGENIC
SBS	Chr1	40849753	C-A	Homo	INTERGENIC
SBS	Chr2	21529070	C-G	Homo	INTERGENIC
SBS	Chr3	7714224	C-T	Homo	INTERGENIC
SBS	Chr3	17175761	G-A	Hetero	INTERGENIC
SBS	Chr3	23203418	C-T	Homo	INTERGENIC
SBS	Chr3	35339544	T-G	Hetero	INTRON
SBS	Chr4	5363095	G-A	Hetero	INTERGENIC
SBS	Chr4	19389432	T-C	Hetero	INTERGENIC
SBS	Chr4	22145614	C-A	Hetero	INTERGENIC
SBS	Chr4	24625698	C-T	Hetero	INTERGENIC
SBS	Chr5	5766519	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	18948487	G-A	Hetero	INTRON
SBS	Chr5	21197377	G-A	Hetero	INTERGENIC
SBS	Chr5	24564765	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	16407082	T-A	Homo	INTERGENIC
SBS	Chr7	15915157	G-A	Hetero	INTERGENIC
SBS	Chr7	27463196	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	28185796	G-A	Hetero	INTERGENIC
SBS	Chr8	11534184	C-T	Hetero	INTERGENIC
SBS	Chr8	13987214	T-A	Hetero	INTERGENIC
SBS	Chr8	16483553	C-G	Hetero	INTERGENIC
SBS	Chr9	10903984	C-T	Homo	INTERGENIC
SBS	Chr10	22662265	T-C	Hetero	INTERGENIC
SBS	Chr11	5368945	A-G	Homo	INTERGENIC
SBS	Chr11	17848592	G-A	Homo	INTERGENIC
SBS	Chr11	24452116	G-A	Hetero	INTERGENIC
SBS	Chr12	4949658	G-A	Hetero	INTERGENIC
SBS	Chr12	6791851	T-C	Hetero	INTERGENIC
SBS	Chr12	14900296	A-T	Hetero	INTERGENIC
SBS	Chr12	24432954	A-G	Hetero	INTERGENIC
SBS	Chr12	26885425	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	26885428	C-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2375276	2375290	14
Deletion	Chr3	2382740	2382742	2
Deletion	Chr4	2405314	2405316	2
Deletion	Chr12	7480192	7480193	1
Deletion	Chr2	11736567	11736568	1
Deletion	Chr7	12417588	12417590	2	OsKitaake07g111000
Deletion	Chr9	13346169	13346170	1	OsKitaake09g088800
Deletion	Chr12	15219926	15219927	1
Deletion	Chr9	16527806	16527807	1
Deletion	Chr7	17239920	17239921	1
Deletion	Chr8	24824288	24824292	4
Deletion	Chr6	25385837	25385839	2	OsKitaake06g225600
Deletion	Chr8	26977001	27305000	327999	55
Deletion	Chr1	36048233	36048237	4
Deletion	Chr1	40236002	40236009	7
Deletion	Chr1	41616103	41616105	2	OsKitaake01g454500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7697989	7746459	2
Inversion	Chr1	7702741	7746496	OsKitaake01g097100
Inversion	Chr2	21277405	21522133	2
Inversion	Chr2	21277415	21522150	2
Inversion	Chr11	27121570	27551262	OsKitaake11g221300
Inversion	Chr11	27551276	27685037

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes