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Mutant Information

Mutant Name	FN853-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN853-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 42425879 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g467400
SBS Chr2 28725891 C-T Hetero INTERGENIC
SBS Chr3 9990901 T-C Homo INTERGENIC
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 18691817 T-A Hetero INTERGENIC
SBS Chr3 18691818 C-A Hetero INTERGENIC
SBS Chr6 7683204 T-A Hetero INTERGENIC
SBS Chr6 7683205 G-A Hetero INTERGENIC
SBS Chr6 7683206 C-A Hetero INTERGENIC
SBS Chr6 15347347 A-G Homo INTERGENIC
SBS Chr6 29087573 C-T Hetero INTERGENIC
SBS Chr7 1136746 A-G Homo INTERGENIC
SBS Chr7 6202012 C-T Hetero INTERGENIC
SBS Chr7 20926970 C-T Hetero INTERGENIC
SBS Chr7 25359618 T-A Hetero INTERGENIC
SBS Chr8 16387830 C-A Homo UTR_3_PRIME
SBS Chr8 22850908 G-A Homo INTERGENIC
SBS Chr9 22487770 G-A Hetero INTRON
SBS Chr10 4183844 A-G Hetero INTERGENIC
SBS Chr10 5947082 C-T Hetero INTERGENIC
SBS Chr10 17272168 C-T Hetero INTRON
SBS Chr11 1861695 G-C Homo INTERGENIC
SBS Chr11 4971276 C-T Hetero INTERGENIC
SBS Chr11 9560651 C-G Hetero INTRON
SBS Chr11 19411285 C-T Hetero INTERGENIC
SBS Chr11 29347816 T-C Homo INTERGENIC
SBS Chr12 5495464 C-G Homo UTR_3_PRIME
SBS Chr12 23791475 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2850412 2850414 2
Deletion Chr3 3757482 3757483 1
Deletion Chr1 14972612 14972613 1
Deletion Chr2 15461691 15461695 4
Deletion Chr2 18189723 18189730 7 OsKitaake02g180700
Deletion Chr2 18480509 18480518 9
Deletion Chr2 18549812 18549819 7
Deletion Chr2 20574291 20574305 14 OsKitaake02g200601
Deletion Chr3 28869232 28869236 4
Deletion Chr3 29009699 29009704 5
Deletion Chr1 29030365 29030370 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 11682007 11682010 2
Insertion Chr6 2888785 2888788 2
Insertion Chr10 1575980 1575983 2
Insertion Chr11 25036464 25036469 4
Insertion Chr2 13865666 13865669 2
Insertion Chr3 20043406 20043419 12

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 4452414 5060136
Inversion Chr12 4452417 5060144

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 34424581 Chr2 18611485 OsKitaake02g183400
Translocation Chr3 34425056 Chr2 18611461 OsKitaake02g183400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	42425879	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g467400
SBS	Chr2	28725891	C-T	Hetero	INTERGENIC
SBS	Chr3	9990901	T-C	Homo	INTERGENIC
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	18691817	T-A	Hetero	INTERGENIC
SBS	Chr3	18691818	C-A	Hetero	INTERGENIC
SBS	Chr6	7683204	T-A	Hetero	INTERGENIC
SBS	Chr6	7683205	G-A	Hetero	INTERGENIC
SBS	Chr6	7683206	C-A	Hetero	INTERGENIC
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr6	29087573	C-T	Hetero	INTERGENIC
SBS	Chr7	1136746	A-G	Homo	INTERGENIC
SBS	Chr7	6202012	C-T	Hetero	INTERGENIC
SBS	Chr7	20926970	C-T	Hetero	INTERGENIC
SBS	Chr7	25359618	T-A	Hetero	INTERGENIC
SBS	Chr8	16387830	C-A	Homo	UTR_3_PRIME
SBS	Chr8	22850908	G-A	Homo	INTERGENIC
SBS	Chr9	22487770	G-A	Hetero	INTRON
SBS	Chr10	4183844	A-G	Hetero	INTERGENIC
SBS	Chr10	5947082	C-T	Hetero	INTERGENIC
SBS	Chr10	17272168	C-T	Hetero	INTRON
SBS	Chr11	1861695	G-C	Homo	INTERGENIC
SBS	Chr11	4971276	C-T	Hetero	INTERGENIC
SBS	Chr11	9560651	C-G	Hetero	INTRON
SBS	Chr11	19411285	C-T	Hetero	INTERGENIC
SBS	Chr11	29347816	T-C	Homo	INTERGENIC
SBS	Chr12	5495464	C-G	Homo	UTR_3_PRIME
SBS	Chr12	23791475	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2850412	2850414	2
Deletion	Chr3	3757482	3757483	1
Deletion	Chr1	14972612	14972613	1
Deletion	Chr2	15461691	15461695	4
Deletion	Chr2	18189723	18189730	7	OsKitaake02g180700
Deletion	Chr2	18480509	18480518	9
Deletion	Chr2	18549812	18549819	7
Deletion	Chr2	20574291	20574305	14	OsKitaake02g200601
Deletion	Chr3	28869232	28869236	4
Deletion	Chr3	29009699	29009704	5
Deletion	Chr1	29030365	29030370	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4452414	5060136
Inversion	Chr12	4452417	5060144

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes