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| Mutant Information |
|---|
| Mutant Name | FN854-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN854-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9477181 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19142332 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 3161081 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 15255813 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 17627415 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19319515 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20290243 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 21297619 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 28611387 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 7772184 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10972618 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23200399 | C-A | Homo | INTRON | |
| SBS | Chr4 | 27763214 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 1028946 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 10201920 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 11077607 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11103718 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 444999 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 6326887 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6355661 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28705375 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 9800964 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 17875003 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 2331579 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15701025 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 16008323 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 19915707 | T-A | Homo | INTRON | |
| SBS | Chr9 | 19915708 | C-A | Homo | INTRON | |
| SBS | Chr9 | 21206061 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 2043668 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4156543 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 4822055 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 5027914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 25428590 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 25911296 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4800035 | G-A | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4358751 | 4358752 | 1 | OsKitaake05g050400 |
| Deletion | Chr9 | 15958913 | 15958914 | 1 | OsKitaake09g113800 |
| Deletion | Chr8 | 17874981 | 17874991 | 10 | |
| Deletion | Chr9 | 19915683 | 19915696 | 13 | |
| Deletion | Chr1 | 26737835 | 26737837 | 2 | |
| Deletion | Chr5 | 30258420 | 30258421 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 20095979 | 20095982 | 2 | |
| Insertion | Chr12 | 4636245 | 4636248 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 20698333 | 20713247 | |
| Inversion | Chr2 | 20698335 | 20713311 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 411472 | Chr3 | 33956795 | OsKitaake03g366500 |