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| Mutant Information |
|---|
| Mutant Name | FN856-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN856-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1471015 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g018300 |
| SBS | Chr1 | 4129744 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g055000 |
| SBS | Chr2 | 17924748 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 11181543 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18433679 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9162670 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 11850586 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 25999461 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 15373798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13633207 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 19990208 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 171546 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 5393400 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 9275694 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13982570 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 19669619 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2117025 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25189470 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 19701451 | T-C | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1940349 | 1940351 | 2 | |
| Deletion | Chr12 | 3039204 | 3039217 | 13 | OsKitaake12g044500 |
| Deletion | Chr2 | 3478502 | 3478509 | 7 | |
| Deletion | Chr12 | 4934484 | 4934502 | 18 | |
| Deletion | Chr2 | 6978497 | 6978499 | 2 | |
| Deletion | Chr9 | 11266181 | 11266182 | 1 | |
| Deletion | Chr6 | 16585001 | 16740000 | 154999 | 10 |
| Deletion | Chr7 | 17061915 | 17061916 | 1 | |
| Deletion | Chr7 | 19917598 | 19917600 | 2 | OsKitaake07g163200 |
| Deletion | Chr10 | 21682586 | 21682600 | 14 | |
| Deletion | Chr8 | 26601001 | 26681000 | 79999 | 8 |
| Deletion | Chr5 | 29061536 | 29061543 | 7 | OsKitaake05g274700 |
| Deletion | Chr11 | 29713403 | 29713415 | 12 | OsKitaake11g245600 |
| Deletion | Chr1 | 34967443 | 34967447 | 4 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5878477 | 5878480 | 2 | |
| Insertion | Chr8 | 469848 | 469851 | 2 | |
| Insertion | Chr9 | 8222033 | 8222036 | 2 | |
| Insertion | Chr3 | 20033409 | 20033422 | 12 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 13934266 | Chr6 | 16580591 | |
| Translocation | Chr12 | 13934293 | Chr6 | 16580825 |