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Mutant Information

Mutant Name	FN857-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN857-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15095157 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g143800
SBS Chr2 2106682 G-A Hetero INTERGENIC
SBS Chr2 6657473 T-A Hetero INTERGENIC
SBS Chr2 9567226 A-C Hetero UTR_5_PRIME
SBS Chr2 11352954 A-T Hetero INTERGENIC
SBS Chr2 24483006 A-G Homo INTRON
SBS Chr3 20381007 G-A Homo INTRON
SBS Chr3 32658339 T-C Hetero INTRON
SBS Chr4 20472183 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 22265017 C-T Hetero INTERGENIC
SBS Chr4 31930717 A-G Homo INTRON
SBS Chr4 36868943 A-T Hetero INTERGENIC
SBS Chr5 12130368 G-A Hetero INTERGENIC
SBS Chr5 12130371 T-G Hetero INTERGENIC
SBS Chr5 12756967 C-G Hetero INTERGENIC
SBS Chr5 12756968 G-T Hetero INTERGENIC
SBS Chr5 19085777 A-G Homo INTERGENIC
SBS Chr6 26558578 A-T Hetero INTERGENIC
SBS Chr7 10289128 C-G Homo INTERGENIC
SBS Chr7 23605283 G-A Hetero INTERGENIC
SBS Chr8 10720818 A-G Hetero INTERGENIC
SBS Chr8 25282089 C-G Hetero INTERGENIC
SBS Chr9 9626405 A-G Homo NON_SYNONYMOUS_CODING OsKitaake09g058700
SBS Chr9 10089637 C-T Hetero INTERGENIC
SBS Chr10 7319736 C-T Hetero INTERGENIC
SBS Chr11 7045235 A-G Hetero INTERGENIC
SBS Chr11 15383718 G-A Hetero INTERGENIC
SBS Chr11 25414268 T-C Hetero INTERGENIC
SBS Chr11 26016492 A-G Hetero INTERGENIC
SBS Chr12 19941532 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2788794 2788795 1
Deletion Chr7 10078753 10078754 1
Deletion Chr10 10507220 10507221 1
Deletion Chr10 12149037 12149039 2
Deletion Chr10 17908476 17908482 6
Deletion Chr12 20130001 20140000 9999
Deletion Chr6 21331288 21331289 1
Deletion Chr1 27960414 27960514 100
Deletion Chr1 39130838 39130839 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6230697 6230700 2
Insertion Chr5 30012903 30012905 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 36184256 36189951

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 36189678 Chr2 30452465 OsKitaake02g310400
Translocation Chr3 36189872 Chr2 30452361 OsKitaake02g310400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15095157	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g143800
SBS	Chr2	2106682	G-A	Hetero	INTERGENIC
SBS	Chr2	6657473	T-A	Hetero	INTERGENIC
SBS	Chr2	9567226	A-C	Hetero	UTR_5_PRIME
SBS	Chr2	11352954	A-T	Hetero	INTERGENIC
SBS	Chr2	24483006	A-G	Homo	INTRON
SBS	Chr3	20381007	G-A	Homo	INTRON
SBS	Chr3	32658339	T-C	Hetero	INTRON
SBS	Chr4	20472183	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	22265017	C-T	Hetero	INTERGENIC
SBS	Chr4	31930717	A-G	Homo	INTRON
SBS	Chr4	36868943	A-T	Hetero	INTERGENIC
SBS	Chr5	12130368	G-A	Hetero	INTERGENIC
SBS	Chr5	12130371	T-G	Hetero	INTERGENIC
SBS	Chr5	12756967	C-G	Hetero	INTERGENIC
SBS	Chr5	12756968	G-T	Hetero	INTERGENIC
SBS	Chr5	19085777	A-G	Homo	INTERGENIC
SBS	Chr6	26558578	A-T	Hetero	INTERGENIC
SBS	Chr7	10289128	C-G	Homo	INTERGENIC
SBS	Chr7	23605283	G-A	Hetero	INTERGENIC
SBS	Chr8	10720818	A-G	Hetero	INTERGENIC
SBS	Chr8	25282089	C-G	Hetero	INTERGENIC
SBS	Chr9	9626405	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g058700
SBS	Chr9	10089637	C-T	Hetero	INTERGENIC
SBS	Chr10	7319736	C-T	Hetero	INTERGENIC
SBS	Chr11	7045235	A-G	Hetero	INTERGENIC
SBS	Chr11	15383718	G-A	Hetero	INTERGENIC
SBS	Chr11	25414268	T-C	Hetero	INTERGENIC
SBS	Chr11	26016492	A-G	Hetero	INTERGENIC
SBS	Chr12	19941532	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2788794	2788795	1
Deletion	Chr7	10078753	10078754	1
Deletion	Chr10	10507220	10507221	1
Deletion	Chr10	12149037	12149039	2
Deletion	Chr10	17908476	17908482	6
Deletion	Chr12	20130001	20140000	9999
Deletion	Chr6	21331288	21331289	1
Deletion	Chr1	27960414	27960514	100
Deletion	Chr1	39130838	39130839	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	36184256	36189951

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes