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Mutant Information

Mutant Name	FN858-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN858-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7323743 T-C Hetero INTRON
SBS Chr1 25142127 C-T Hetero INTERGENIC
SBS Chr2 2584649 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 24291717 T-A Homo INTERGENIC
SBS Chr2 27110222 C-T Hetero INTERGENIC
SBS Chr2 31110138 T-A Hetero INTRON
SBS Chr2 32044730 G-T Hetero INTERGENIC
SBS Chr3 16416226 C-T Hetero SPLICE_SITE_REGION
SBS Chr3 36930231 C-G Homo INTRON
SBS Chr4 14434817 G-A Homo INTERGENIC
SBS Chr4 23650215 C-T Hetero INTRON
SBS Chr4 24033400 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g152850
SBS Chr4 30320762 C-T Hetero INTERGENIC
SBS Chr4 31984469 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g253800
SBS Chr4 31984471 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 32205309 C-T Hetero INTRON
SBS Chr5 11384587 G-T Hetero INTERGENIC
SBS Chr5 12276093 C-G Hetero INTERGENIC
SBS Chr5 13421834 C-T Hetero INTERGENIC
SBS Chr5 25652342 C-T Homo INTRON
SBS Chr6 10817448 A-T Hetero INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr7 25286820 A-T Hetero INTERGENIC
SBS Chr8 13990939 C-A Homo INTERGENIC
SBS Chr9 3443917 C-G Hetero INTERGENIC
SBS Chr9 4842763 C-A Hetero INTERGENIC
SBS Chr9 16459748 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g119800
SBS Chr9 18421730 C-T Hetero INTERGENIC
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr11 8897660 G-A Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2322078 2322080 2
Deletion Chr5 3750877 3750879 2
Deletion Chr2 5842001 5878000 35999 5
Deletion Chr1 6224274 6224275 1
Deletion Chr5 13423674 13423679 5
Deletion Chr4 13589331 13589336 5
Deletion Chr4 13763445 13763453 8
Deletion Chr1 16410233 16410240 7
Deletion Chr4 18675596 18675603 7
Deletion Chr8 19410001 19606000 195999 15
Deletion Chr6 20098250 20098317 67
Deletion Chr12 21933593 21933594 1 OsKitaake12g171900
Deletion Chr12 22774832 22774915 83
Deletion Chr4 22998495 22998505 10
Deletion Chr6 24954001 24980000 25999
Deletion Chr2 26644001 26690000 45999 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 19027828 19027831 2
Insertion Chr9 19668113 19668116 2
Insertion Chr10 6741897 6741900 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 1003922 1186341
Inversion Chr6 1003937 1186679
Inversion Chr8 19409239 19952084
Inversion Chr8 19605639 19952089

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 373037 Chr11 214181
Translocation Chr6 1186347 Chr4 28778839
Translocation Chr6 1186672 Chr4 28778829
Translocation Chr2 5874904 Chr1 43180429
Translocation Chr12 14676463 Chr1 43180424
Translocation Chr12 14688665 Chr1 43180429

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7323743	T-C	Hetero	INTRON
SBS	Chr1	25142127	C-T	Hetero	INTERGENIC
SBS	Chr2	2584649	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	24291717	T-A	Homo	INTERGENIC
SBS	Chr2	27110222	C-T	Hetero	INTERGENIC
SBS	Chr2	31110138	T-A	Hetero	INTRON
SBS	Chr2	32044730	G-T	Hetero	INTERGENIC
SBS	Chr3	16416226	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr3	36930231	C-G	Homo	INTRON
SBS	Chr4	14434817	G-A	Homo	INTERGENIC
SBS	Chr4	23650215	C-T	Hetero	INTRON
SBS	Chr4	24033400	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g152850
SBS	Chr4	30320762	C-T	Hetero	INTERGENIC
SBS	Chr4	31984469	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g253800
SBS	Chr4	31984471	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	32205309	C-T	Hetero	INTRON
SBS	Chr5	11384587	G-T	Hetero	INTERGENIC
SBS	Chr5	12276093	C-G	Hetero	INTERGENIC
SBS	Chr5	13421834	C-T	Hetero	INTERGENIC
SBS	Chr5	25652342	C-T	Homo	INTRON
SBS	Chr6	10817448	A-T	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr7	25286820	A-T	Hetero	INTERGENIC
SBS	Chr8	13990939	C-A	Homo	INTERGENIC
SBS	Chr9	3443917	C-G	Hetero	INTERGENIC
SBS	Chr9	4842763	C-A	Hetero	INTERGENIC
SBS	Chr9	16459748	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g119800
SBS	Chr9	18421730	C-T	Hetero	INTERGENIC
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr11	8897660	G-A	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2322078	2322080	2
Deletion	Chr5	3750877	3750879	2
Deletion	Chr2	5842001	5878000	35999	5
Deletion	Chr1	6224274	6224275	1
Deletion	Chr5	13423674	13423679	5
Deletion	Chr4	13589331	13589336	5
Deletion	Chr4	13763445	13763453	8
Deletion	Chr1	16410233	16410240	7
Deletion	Chr4	18675596	18675603	7
Deletion	Chr8	19410001	19606000	195999	15
Deletion	Chr6	20098250	20098317	67
Deletion	Chr12	21933593	21933594	1	OsKitaake12g171900
Deletion	Chr12	22774832	22774915	83
Deletion	Chr4	22998495	22998505	10
Deletion	Chr6	24954001	24980000	25999
Deletion	Chr2	26644001	26690000	45999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1003922	1186341
Inversion	Chr6	1003937	1186679
Inversion	Chr8	19409239	19952084
Inversion	Chr8	19605639	19952089

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes