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Mutant Information

Mutant Name	FN859-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN859-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1982208 C-A Homo INTRON
SBS Chr1 20171198 T-C Hetero INTERGENIC
SBS Chr1 21601979 T-C Homo INTERGENIC
SBS Chr1 37070686 C-G Homo INTERGENIC
SBS Chr1 40853803 A-T Homo INTRON
SBS Chr2 15726410 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g162900
SBS Chr2 17886348 C-A Hetero INTERGENIC
SBS Chr2 24881801 G-A Homo INTERGENIC
SBS Chr3 5419714 G-A Homo INTERGENIC
SBS Chr3 30490104 C-T Homo INTRON
SBS Chr4 4572826 G-T Hetero INTERGENIC
SBS Chr4 8339798 C-A Homo INTERGENIC
SBS Chr5 7291139 A-T Homo INTRON
SBS Chr5 14749025 C-T Hetero INTRON
SBS Chr6 1154584 T-A Homo INTERGENIC
SBS Chr6 7678670 C-T Homo INTERGENIC
SBS Chr6 13087783 C-T Hetero INTERGENIC
SBS Chr6 15473849 A-C Hetero INTERGENIC
SBS Chr6 21647378 T-A Hetero INTERGENIC
SBS Chr6 26791023 C-T Hetero INTRON
SBS Chr7 5479334 G-A Hetero INTERGENIC
SBS Chr7 5705906 G-A Hetero INTERGENIC
SBS Chr7 15474190 G-T Hetero INTERGENIC
SBS Chr7 22992317 T-A Hetero INTERGENIC
SBS Chr7 27544743 G-T Homo INTRON
SBS Chr8 6247127 A-G Hetero INTERGENIC
SBS Chr8 16430510 G-A Hetero INTERGENIC
SBS Chr8 16982289 C-T Hetero INTERGENIC
SBS Chr8 25596459 C-G Homo INTERGENIC
SBS Chr9 3336332 T-A Hetero INTERGENIC
SBS Chr9 6614871 C-T Homo INTERGENIC
SBS Chr10 17696569 A-T Homo INTERGENIC
SBS Chr11 9929315 T-G Hetero INTERGENIC
SBS Chr11 22220312 A-G Hetero INTERGENIC
SBS Chr12 2668898 A-T Hetero INTERGENIC
SBS Chr12 2877548 A-T Hetero INTERGENIC
SBS Chr12 10928752 T-A Homo INTERGENIC
SBS Chr12 12258767 G-T Homo INTERGENIC
SBS Chr12 20507566 C-T Hetero INTERGENIC
SBS Chr12 21734778 G-A Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 4333874 4333877 3
Deletion Chr7 6704361 6704362 1
Deletion Chr3 14766785 14766786 1
Deletion Chr7 26424919 26424927 8
Deletion Chr6 30061163 30061166 3
Deletion Chr4 30699543 30699544 1
Deletion Chr4 31032864 31032874 10
Deletion Chr1 37005827 37005830 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5964366 5964369 2
Insertion Chr8 21405234 21405237 2
Insertion Chr5 29287059 29287062 2
Insertion Chr8 24469783 24469786 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 4219501 4293252
Inversion Chr9 4219505 4293258

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11959750 Chr1 37564878
Translocation Chr7 11959768 Chr1 37565819

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1982208	C-A	Homo	INTRON
SBS	Chr1	20171198	T-C	Hetero	INTERGENIC
SBS	Chr1	21601979	T-C	Homo	INTERGENIC
SBS	Chr1	37070686	C-G	Homo	INTERGENIC
SBS	Chr1	40853803	A-T	Homo	INTRON
SBS	Chr2	15726410	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g162900
SBS	Chr2	17886348	C-A	Hetero	INTERGENIC
SBS	Chr2	24881801	G-A	Homo	INTERGENIC
SBS	Chr3	5419714	G-A	Homo	INTERGENIC
SBS	Chr3	30490104	C-T	Homo	INTRON
SBS	Chr4	4572826	G-T	Hetero	INTERGENIC
SBS	Chr4	8339798	C-A	Homo	INTERGENIC
SBS	Chr5	7291139	A-T	Homo	INTRON
SBS	Chr5	14749025	C-T	Hetero	INTRON
SBS	Chr6	1154584	T-A	Homo	INTERGENIC
SBS	Chr6	7678670	C-T	Homo	INTERGENIC
SBS	Chr6	13087783	C-T	Hetero	INTERGENIC
SBS	Chr6	15473849	A-C	Hetero	INTERGENIC
SBS	Chr6	21647378	T-A	Hetero	INTERGENIC
SBS	Chr6	26791023	C-T	Hetero	INTRON
SBS	Chr7	5479334	G-A	Hetero	INTERGENIC
SBS	Chr7	5705906	G-A	Hetero	INTERGENIC
SBS	Chr7	15474190	G-T	Hetero	INTERGENIC
SBS	Chr7	22992317	T-A	Hetero	INTERGENIC
SBS	Chr7	27544743	G-T	Homo	INTRON
SBS	Chr8	6247127	A-G	Hetero	INTERGENIC
SBS	Chr8	16430510	G-A	Hetero	INTERGENIC
SBS	Chr8	16982289	C-T	Hetero	INTERGENIC
SBS	Chr8	25596459	C-G	Homo	INTERGENIC
SBS	Chr9	3336332	T-A	Hetero	INTERGENIC
SBS	Chr9	6614871	C-T	Homo	INTERGENIC
SBS	Chr10	17696569	A-T	Homo	INTERGENIC
SBS	Chr11	9929315	T-G	Hetero	INTERGENIC
SBS	Chr11	22220312	A-G	Hetero	INTERGENIC
SBS	Chr12	2668898	A-T	Hetero	INTERGENIC
SBS	Chr12	2877548	A-T	Hetero	INTERGENIC
SBS	Chr12	10928752	T-A	Homo	INTERGENIC
SBS	Chr12	12258767	G-T	Homo	INTERGENIC
SBS	Chr12	20507566	C-T	Hetero	INTERGENIC
SBS	Chr12	21734778	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	4333874	4333877	3
Deletion	Chr7	6704361	6704362	1
Deletion	Chr3	14766785	14766786	1
Deletion	Chr7	26424919	26424927	8
Deletion	Chr6	30061163	30061166	3
Deletion	Chr4	30699543	30699544	1
Deletion	Chr4	31032864	31032874	10
Deletion	Chr1	37005827	37005830	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4219501	4293252
Inversion	Chr9	4219505	4293258

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes