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| Mutant Information |
|---|
| Mutant Name | FN860-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN860-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27903398 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 39810308 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 40896938 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 19636260 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 23153278 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2072301 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4030623 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10328679 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 8290108 | T-A | Homo | INTRON | |
| SBS | Chr4 | 8290109 | C-A | Homo | INTRON | |
| SBS | Chr4 | 8290110 | T-A | Homo | INTRON | |
| SBS | Chr4 | 8971914 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 29330894 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26755904 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26755905 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6178906 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6184500 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 9919765 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 10312153 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12272417 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13308013 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g117600 |
| SBS | Chr7 | 15468571 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17315885 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17574529 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 6589221 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12692804 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16381964 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16870764 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27201665 | C-T | Homo | INTRON | |
| SBS | Chr9 | 1904895 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5445940 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16592667 | T-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 5882291 | 5882295 | 4 | |
| Deletion | Chr11 | 8999829 | 8999837 | 8 | |
| Deletion | Chr10 | 9844389 | 9844390 | 1 | OsKitaake10g057400 |
| Deletion | Chr11 | 9902584 | 9902598 | 14 | |
| Deletion | Chr5 | 10119539 | 10119541 | 2 | OsKitaake05g089901 |
| Deletion | Chr1 | 11931872 | 11931873 | 1 | |
| Deletion | Chr9 | 14781302 | 14781304 | 2 | |
| Deletion | Chr9 | 18147276 | 18147287 | 11 | |
| Deletion | Chr4 | 18147547 | 18147548 | 1 | |
| Deletion | Chr3 | 30120623 | 30120625 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 25079029 | 25079032 | 2 | |
| Insertion | Chr11 | 11876774 | 11876777 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 446754 | 501699 | OsKitaake09g003500 |
| Inversion | Chr9 | 446755 | 501937 | OsKitaake09g003500 |
| Inversion | Chr7 | 13305236 | 13389746 | OsKitaake07g117600 |
| Inversion | Chr7 | 13305242 | 13389750 | OsKitaake07g117600 |
| Inversion | Chr5 | 18375771 | 18689128 |