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Mutant Information

Mutant Name	FN861-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN861-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13480182 G-T Homo INTERGENIC
SBS Chr1 42722141 C-T Homo INTERGENIC
SBS Chr2 4698292 A-G Homo INTERGENIC
SBS Chr3 19693503 C-T Homo INTERGENIC
SBS Chr3 32463860 G-A Hetero UTR_3_PRIME
SBS Chr4 17926261 C-A Hetero INTERGENIC
SBS Chr6 9439876 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g111700
SBS Chr7 2670485 C-T Hetero INTERGENIC
SBS Chr7 8305671 C-G Hetero INTERGENIC
SBS Chr8 20572956 G-A Hetero UTR_3_PRIME
SBS Chr9 10121246 G-A Homo INTERGENIC
SBS Chr9 14319120 G-A Homo INTERGENIC
SBS Chr9 18550957 C-T Homo INTERGENIC
SBS Chr10 3742829 T-A Hetero INTERGENIC
SBS Chr11 9800519 C-T Homo INTERGENIC
SBS Chr11 18140466 G-C Homo INTERGENIC
SBS Chr11 23911894 C-T Hetero INTERGENIC
SBS Chr11 24815047 A-G Hetero INTRON
SBS Chr12 1420330 G-A Hetero INTERGENIC
SBS Chr12 2669738 C-T Hetero INTERGENIC
SBS Chr12 9696996 G-C Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2774456 2774463 7
Deletion Chr2 5207001 5241000 33999 2
Deletion Chr9 5443773 5443774 1
Deletion Chr12 11456348 11456351 3
Deletion Chr4 11721632 11721634 2
Deletion Chr5 12158433 12158444 11
Deletion Chr12 12260558 12260561 3
Deletion Chr10 12416945 12416957 12
Deletion Chr9 15526096 15526103 7
Deletion Chr3 19830488 19830494 6
Deletion Chr3 20034154 20034607 453
Deletion Chr11 25168813 25168816 3
Deletion Chr8 25673272 25673276 4
Deletion Chr4 26986458 26986475 17
Deletion Chr1 44061821 44061825 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43431302 43431307 4
Insertion Chr5 11527814 11527817 2
Insertion Chr9 3057509 3057512 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 26297955 27152089 OsKitaake11g212800
Inversion Chr11 26297964 26583257 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11873611 Chr4 28723473

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13480182	G-T	Homo	INTERGENIC
SBS	Chr1	42722141	C-T	Homo	INTERGENIC
SBS	Chr2	4698292	A-G	Homo	INTERGENIC
SBS	Chr3	19693503	C-T	Homo	INTERGENIC
SBS	Chr3	32463860	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	17926261	C-A	Hetero	INTERGENIC
SBS	Chr6	9439876	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g111700
SBS	Chr7	2670485	C-T	Hetero	INTERGENIC
SBS	Chr7	8305671	C-G	Hetero	INTERGENIC
SBS	Chr8	20572956	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	10121246	G-A	Homo	INTERGENIC
SBS	Chr9	14319120	G-A	Homo	INTERGENIC
SBS	Chr9	18550957	C-T	Homo	INTERGENIC
SBS	Chr10	3742829	T-A	Hetero	INTERGENIC
SBS	Chr11	9800519	C-T	Homo	INTERGENIC
SBS	Chr11	18140466	G-C	Homo	INTERGENIC
SBS	Chr11	23911894	C-T	Hetero	INTERGENIC
SBS	Chr11	24815047	A-G	Hetero	INTRON
SBS	Chr12	1420330	G-A	Hetero	INTERGENIC
SBS	Chr12	2669738	C-T	Hetero	INTERGENIC
SBS	Chr12	9696996	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2774456	2774463	7
Deletion	Chr2	5207001	5241000	33999	2
Deletion	Chr9	5443773	5443774	1
Deletion	Chr12	11456348	11456351	3
Deletion	Chr4	11721632	11721634	2
Deletion	Chr5	12158433	12158444	11
Deletion	Chr12	12260558	12260561	3
Deletion	Chr10	12416945	12416957	12
Deletion	Chr9	15526096	15526103	7
Deletion	Chr3	19830488	19830494	6
Deletion	Chr3	20034154	20034607	453
Deletion	Chr11	25168813	25168816	3
Deletion	Chr8	25673272	25673276	4
Deletion	Chr4	26986458	26986475	17
Deletion	Chr1	44061821	44061825	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	26297955	27152089	OsKitaake11g212800
Inversion	Chr11	26297964	26583257	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes