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Mutant Information

Mutant Name	FN862-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN862-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6217404 A-G Hetero INTRON
SBS Chr1 12324893 A-G Homo INTERGENIC
SBS Chr2 2006240 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g030400
SBS Chr2 12831034 A-C Homo INTERGENIC
SBS Chr4 2096493 G-A Hetero INTERGENIC
SBS Chr4 6856514 G-A Hetero INTERGENIC
SBS Chr4 8564120 A-G Homo INTERGENIC
SBS Chr4 8564121 T-A Homo INTERGENIC
SBS Chr4 8564122 T-A Homo INTERGENIC
SBS Chr4 17719911 C-A Hetero INTERGENIC
SBS Chr4 28430542 G-C Homo INTERGENIC
SBS Chr4 30685842 A-G Homo INTERGENIC
SBS Chr5 16694630 G-A Hetero INTERGENIC
SBS Chr6 6329035 T-A Homo INTERGENIC
SBS Chr6 29496840 A-G Hetero INTERGENIC
SBS Chr7 18821480 G-A Hetero INTERGENIC
SBS Chr7 24839816 C-T Hetero INTERGENIC
SBS Chr7 27235034 G-A Hetero INTERGENIC
SBS Chr8 12253349 G-A Hetero INTERGENIC
SBS Chr8 14390027 A-G Hetero INTERGENIC
SBS Chr9 5000672 C-T Hetero INTRON
SBS Chr9 19445320 T-A Hetero INTERGENIC
SBS Chr9 21559021 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 21836723 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g176101
SBS Chr11 24766063 T-C Homo INTERGENIC
SBS Chr12 4847954 G-A Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 7170597 7170602 5
Deletion Chr11 10787711 10787821 110
Deletion Chr9 11252827 11252830 3
Deletion Chr12 11715032 11715517 485
Deletion Chr1 13322153 13322156 3
Deletion Chr12 13457001 13508000 50999 2
Deletion Chr2 21933826 21933841 15
Deletion Chr1 40906105 40906110 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17647287 17647291 3
Insertion Chr10 11330784 11330787 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 26523743 26547949
Inversion Chr6 26525483 26547959

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5751578 Chr1 6117000 OsKitaake12g069800
Translocation Chr12 5753036 Chr1 6116991 OsKitaake12g069800
Translocation Chr8 28960612 Chr1 30478391

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6217404	A-G	Hetero	INTRON
SBS	Chr1	12324893	A-G	Homo	INTERGENIC
SBS	Chr2	2006240	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g030400
SBS	Chr2	12831034	A-C	Homo	INTERGENIC
SBS	Chr4	2096493	G-A	Hetero	INTERGENIC
SBS	Chr4	6856514	G-A	Hetero	INTERGENIC
SBS	Chr4	8564120	A-G	Homo	INTERGENIC
SBS	Chr4	8564121	T-A	Homo	INTERGENIC
SBS	Chr4	8564122	T-A	Homo	INTERGENIC
SBS	Chr4	17719911	C-A	Hetero	INTERGENIC
SBS	Chr4	28430542	G-C	Homo	INTERGENIC
SBS	Chr4	30685842	A-G	Homo	INTERGENIC
SBS	Chr5	16694630	G-A	Hetero	INTERGENIC
SBS	Chr6	6329035	T-A	Homo	INTERGENIC
SBS	Chr6	29496840	A-G	Hetero	INTERGENIC
SBS	Chr7	18821480	G-A	Hetero	INTERGENIC
SBS	Chr7	24839816	C-T	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Hetero	INTERGENIC
SBS	Chr8	12253349	G-A	Hetero	INTERGENIC
SBS	Chr8	14390027	A-G	Hetero	INTERGENIC
SBS	Chr9	5000672	C-T	Hetero	INTRON
SBS	Chr9	19445320	T-A	Hetero	INTERGENIC
SBS	Chr9	21559021	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	21836723	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g176101
SBS	Chr11	24766063	T-C	Homo	INTERGENIC
SBS	Chr12	4847954	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	7170597	7170602	5
Deletion	Chr11	10787711	10787821	110
Deletion	Chr9	11252827	11252830	3
Deletion	Chr12	11715032	11715517	485
Deletion	Chr1	13322153	13322156	3
Deletion	Chr12	13457001	13508000	50999	2
Deletion	Chr2	21933826	21933841	15
Deletion	Chr1	40906105	40906110	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26523743	26547949
Inversion	Chr6	26525483	26547959

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes