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Mutant Information

Mutant Name	FN863-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN863-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10158359 A-T Hetero INTERGENIC
SBS Chr1 12615745 T-C Hetero INTERGENIC
SBS Chr1 27085681 A-T Hetero INTERGENIC
SBS Chr1 30628814 T-C Homo INTERGENIC
SBS Chr1 37933730 C-A Hetero INTERGENIC
SBS Chr2 18870235 G-A Hetero INTERGENIC
SBS Chr2 19077633 A-G Hetero INTERGENIC
SBS Chr2 19209588 C-T Hetero INTERGENIC
SBS Chr2 36037980 C-A Hetero INTERGENIC
SBS Chr2 36142077 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g381500
SBS Chr3 7744894 A-T Hetero INTERGENIC
SBS Chr3 7923368 T-A Hetero SYNONYMOUS_CODING
SBS Chr3 16546623 T-C Homo INTERGENIC
SBS Chr3 32781303 G-A Hetero INTERGENIC
SBS Chr3 35428850 G-T Homo INTERGENIC
SBS Chr4 10910855 G-A Hetero INTERGENIC
SBS Chr4 16506925 C-G Hetero INTRON
SBS Chr4 24838185 A-G Hetero INTRON
SBS Chr5 9999708 C-A Hetero INTRON
SBS Chr6 1516654 C-T Hetero INTRON
SBS Chr6 2541596 A-T Hetero INTERGENIC
SBS Chr6 2663243 C-T Homo INTERGENIC
SBS Chr6 25170890 G-A Hetero INTERGENIC
SBS Chr6 28669956 G-A Homo INTERGENIC
SBS Chr7 8168155 C-A Hetero INTRON
SBS Chr7 8168156 G-T Hetero INTRON
SBS Chr7 8747614 T-C Hetero INTERGENIC
SBS Chr7 17895862 C-T Hetero INTERGENIC
SBS Chr7 27576178 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g256700
SBS Chr9 761595 A-T Hetero INTRON
SBS Chr9 10983822 A-G Homo INTRON
SBS Chr9 11680596 C-T Hetero INTERGENIC
SBS Chr9 12584802 A-G Hetero INTERGENIC
SBS Chr9 13939681 G-A Hetero INTERGENIC
SBS Chr9 18598458 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g146600
SBS Chr11 8798582 A-G Homo INTERGENIC
SBS Chr11 20695394 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g162600
SBS Chr11 21969492 A-G Hetero INTERGENIC
SBS Chr12 14906536 A-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 5569001 5599000 29999 3
Deletion Chr11 8074902 8074918 16 OsKitaake11g089100
Deletion Chr2 9106647 9106650 3
Deletion Chr12 9878382 9878387 5
Deletion Chr3 11405568 11405570 2
Deletion Chr9 11430976 11430982 6
Deletion Chr11 12463451 12463476 25
Deletion Chr11 21167586 21167653 67
Deletion Chr5 21300650 21300657 7
Deletion Chr6 22184033 22184036 3
Deletion Chr6 25499327 25499329 2
Deletion Chr12 26692748 26692751 3
Deletion Chr12 26772659 26772664 5
Deletion Chr4 31449964 31449972 8
Deletion Chr3 34405608 34405610 2 OsKitaake03g373600
Deletion Chr3 35435612 35435615 3
Deletion Chr1 43736332 43736334 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 20575200 20575203 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10158359	A-T	Hetero	INTERGENIC
SBS	Chr1	12615745	T-C	Hetero	INTERGENIC
SBS	Chr1	27085681	A-T	Hetero	INTERGENIC
SBS	Chr1	30628814	T-C	Homo	INTERGENIC
SBS	Chr1	37933730	C-A	Hetero	INTERGENIC
SBS	Chr2	18870235	G-A	Hetero	INTERGENIC
SBS	Chr2	19077633	A-G	Hetero	INTERGENIC
SBS	Chr2	19209588	C-T	Hetero	INTERGENIC
SBS	Chr2	36037980	C-A	Hetero	INTERGENIC
SBS	Chr2	36142077	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g381500
SBS	Chr3	7744894	A-T	Hetero	INTERGENIC
SBS	Chr3	7923368	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	16546623	T-C	Homo	INTERGENIC
SBS	Chr3	32781303	G-A	Hetero	INTERGENIC
SBS	Chr3	35428850	G-T	Homo	INTERGENIC
SBS	Chr4	10910855	G-A	Hetero	INTERGENIC
SBS	Chr4	16506925	C-G	Hetero	INTRON
SBS	Chr4	24838185	A-G	Hetero	INTRON
SBS	Chr5	9999708	C-A	Hetero	INTRON
SBS	Chr6	1516654	C-T	Hetero	INTRON
SBS	Chr6	2541596	A-T	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Homo	INTERGENIC
SBS	Chr6	25170890	G-A	Hetero	INTERGENIC
SBS	Chr6	28669956	G-A	Homo	INTERGENIC
SBS	Chr7	8168155	C-A	Hetero	INTRON
SBS	Chr7	8168156	G-T	Hetero	INTRON
SBS	Chr7	8747614	T-C	Hetero	INTERGENIC
SBS	Chr7	17895862	C-T	Hetero	INTERGENIC
SBS	Chr7	27576178	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g256700
SBS	Chr9	761595	A-T	Hetero	INTRON
SBS	Chr9	10983822	A-G	Homo	INTRON
SBS	Chr9	11680596	C-T	Hetero	INTERGENIC
SBS	Chr9	12584802	A-G	Hetero	INTERGENIC
SBS	Chr9	13939681	G-A	Hetero	INTERGENIC
SBS	Chr9	18598458	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g146600
SBS	Chr11	8798582	A-G	Homo	INTERGENIC
SBS	Chr11	20695394	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g162600
SBS	Chr11	21969492	A-G	Hetero	INTERGENIC
SBS	Chr12	14906536	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5569001	5599000	29999	3
Deletion	Chr11	8074902	8074918	16	OsKitaake11g089100
Deletion	Chr2	9106647	9106650	3
Deletion	Chr12	9878382	9878387	5
Deletion	Chr3	11405568	11405570	2
Deletion	Chr9	11430976	11430982	6
Deletion	Chr11	12463451	12463476	25
Deletion	Chr11	21167586	21167653	67
Deletion	Chr5	21300650	21300657	7
Deletion	Chr6	22184033	22184036	3
Deletion	Chr6	25499327	25499329	2
Deletion	Chr12	26692748	26692751	3
Deletion	Chr12	26772659	26772664	5
Deletion	Chr4	31449964	31449972	8
Deletion	Chr3	34405608	34405610	2	OsKitaake03g373600
Deletion	Chr3	35435612	35435615	3
Deletion	Chr1	43736332	43736334	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes