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Mutant Information

Mutant Name	FN864-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN864-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Hetero INTRON
SBS Chr2 18487503 G-A Hetero INTERGENIC
SBS Chr2 30464968 A-G Hetero INTERGENIC
SBS Chr2 30798569 G-A Hetero INTERGENIC
SBS Chr2 36325879 C-A Hetero INTERGENIC
SBS Chr3 9501496 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g128900
SBS Chr3 12142874 C-T Hetero INTRON
SBS Chr3 23468674 C-T Hetero INTRON
SBS Chr4 12232448 T-C Hetero UTR_3_PRIME
SBS Chr4 12554920 A-T Hetero INTERGENIC
SBS Chr4 15105667 T-A Hetero INTERGENIC
SBS Chr4 27302622 G-A Hetero INTERGENIC
SBS Chr5 15398121 G-A Hetero INTERGENIC
SBS Chr5 15847626 G-A Hetero INTERGENIC
SBS Chr5 17427657 C-T Hetero INTERGENIC
SBS Chr5 21744240 G-A Homo SYNONYMOUS_CODING
SBS Chr5 29456903 C-T Homo INTRON
SBS Chr6 624346 T-C Hetero INTRON
SBS Chr6 3621323 A-C Hetero INTRON
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr7 10301011 C-A Hetero INTERGENIC
SBS Chr7 13427959 G-A Hetero INTERGENIC
SBS Chr7 15520588 A-T Hetero INTERGENIC
SBS Chr8 9822744 C-G Homo NON_SYNONYMOUS_CODING OsKitaake08g091600
SBS Chr8 24994029 C-T Hetero INTERGENIC
SBS Chr9 637652 G-C Hetero INTERGENIC
SBS Chr9 7479503 T-G Hetero INTERGENIC
SBS Chr10 22646936 G-C Hetero INTERGENIC
SBS Chr11 13138013 G-C Homo INTERGENIC
SBS Chr11 19617584 A-T Hetero INTERGENIC
SBS Chr11 28612004 T-C Hetero INTERGENIC
SBS Chr12 19878743 A-G Homo INTERGENIC
SBS Chr12 26185436 T-A Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 8911738 8911739 1
Deletion Chr10 9495312 9495326 14
Deletion Chr2 18925001 18981000 55999 2
Deletion Chr2 20550466 20550788 322
Deletion Chr1 21788083 21788089 6
Deletion Chr11 25134865 25134876 11
Deletion Chr2 35697825 35697826 1
Deletion Chr1 42062363 42062364 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 4499896 4499899 2
Insertion Chr6 24846096 24846099 2
Insertion Chr8 14834878 14834881 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 10043478 Chr2 15123576 OsKitaake04g053800
Translocation Chr12 24173495 Chr4 10041708 OsKitaake04g053800
Translocation Chr12 24898344 Chr2 33576905
Translocation Chr12 24899983 Chr2 33576910 OsKitaake12g202200
Translocation Chr11 28071605 Chr2 15108843

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Hetero	INTRON
SBS	Chr2	18487503	G-A	Hetero	INTERGENIC
SBS	Chr2	30464968	A-G	Hetero	INTERGENIC
SBS	Chr2	30798569	G-A	Hetero	INTERGENIC
SBS	Chr2	36325879	C-A	Hetero	INTERGENIC
SBS	Chr3	9501496	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g128900
SBS	Chr3	12142874	C-T	Hetero	INTRON
SBS	Chr3	23468674	C-T	Hetero	INTRON
SBS	Chr4	12232448	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	12554920	A-T	Hetero	INTERGENIC
SBS	Chr4	15105667	T-A	Hetero	INTERGENIC
SBS	Chr4	27302622	G-A	Hetero	INTERGENIC
SBS	Chr5	15398121	G-A	Hetero	INTERGENIC
SBS	Chr5	15847626	G-A	Hetero	INTERGENIC
SBS	Chr5	17427657	C-T	Hetero	INTERGENIC
SBS	Chr5	21744240	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr5	29456903	C-T	Homo	INTRON
SBS	Chr6	624346	T-C	Hetero	INTRON
SBS	Chr6	3621323	A-C	Hetero	INTRON
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr7	10301011	C-A	Hetero	INTERGENIC
SBS	Chr7	13427959	G-A	Hetero	INTERGENIC
SBS	Chr7	15520588	A-T	Hetero	INTERGENIC
SBS	Chr8	9822744	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g091600
SBS	Chr8	24994029	C-T	Hetero	INTERGENIC
SBS	Chr9	637652	G-C	Hetero	INTERGENIC
SBS	Chr9	7479503	T-G	Hetero	INTERGENIC
SBS	Chr10	22646936	G-C	Hetero	INTERGENIC
SBS	Chr11	13138013	G-C	Homo	INTERGENIC
SBS	Chr11	19617584	A-T	Hetero	INTERGENIC
SBS	Chr11	28612004	T-C	Hetero	INTERGENIC
SBS	Chr12	19878743	A-G	Homo	INTERGENIC
SBS	Chr12	26185436	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	8911738	8911739	1
Deletion	Chr10	9495312	9495326	14
Deletion	Chr2	18925001	18981000	55999	2
Deletion	Chr2	20550466	20550788	322
Deletion	Chr1	21788083	21788089	6
Deletion	Chr11	25134865	25134876	11
Deletion	Chr2	35697825	35697826	1
Deletion	Chr1	42062363	42062364	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	10043478	Chr2	15123576	OsKitaake04g053800
Translocation	Chr12	24173495	Chr4	10041708	OsKitaake04g053800
Translocation	Chr12	24898344	Chr2	33576905
Translocation	Chr12	24899983	Chr2	33576910	OsKitaake12g202200
Translocation	Chr11	28071605	Chr2	15108843

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes