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| Mutant Information |
|---|
| Mutant Name | FN865-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN865-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7607578 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 33516973 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 33648189 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 8640033 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 12056255 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29845240 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1813362 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 4183437 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1204900 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 3524737 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4123347 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 15105699 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 3392491 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 11125089 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 13593717 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27585680 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 17273612 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19295078 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9349009 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 4741277 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 15627568 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10936156 | G-T | Homo | INTRON | |
| SBS | Chr11 | 10936170 | T-G | Homo | INTRON | |
| SBS | Chr11 | 10936194 | G-A | Homo | INTRON | |
| SBS | Chr11 | 18163233 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 22126165 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25287893 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19687053 | T-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1305546 | 1305557 | 11 | |
| Deletion | Chr5 | 5593463 | 5593465 | 2 | |
| Deletion | Chr7 | 8526001 | 8551000 | 24999 | |
| Deletion | Chr11 | 10291850 | 10291853 | 3 | |
| Deletion | Chr1 | 10645227 | 10645229 | 2 | |
| Deletion | Chr12 | 12181001 | 12672000 | 490999 | 22 |
| Deletion | Chr6 | 22918555 | 22918556 | 1 | |
| Deletion | Chr2 | 31375768 | 31375780 | 12 | |
| Deletion | Chr1 | 33601288 | 33601292 | 4 | OsKitaake01g344500 |
| Deletion | Chr1 | 33676826 | 33676836 | 10 | OsKitaake01g345400 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 20672720 | 20739943 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 5618727 | Chr2 | 18812495 | |
| Translocation | Chr12 | 14349277 | Chr2 | 18816966 | |
| Translocation | Chr12 | 14349280 | Chr2 | 18812513 |