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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN866-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN866-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13309780 A-G Homo INTERGENIC
SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr1 19889218 T-C Hetero INTERGENIC
SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr2 2591192 G-T Homo INTRON
SBS Chr3 24783212 C-G Hetero INTERGENIC
SBS Chr3 30436421 T-C Homo INTRON
SBS Chr6 20615560 T-C Hetero INTERGENIC
SBS Chr7 13384371 A-G Homo INTERGENIC
SBS Chr8 16338855 A-T Hetero INTERGENIC
SBS Chr8 16338863 A-G Hetero INTERGENIC
SBS Chr8 16644873 T-A Hetero INTERGENIC
SBS Chr8 16644874 C-A Hetero INTERGENIC
SBS Chr9 2960457 A-G Hetero INTRON
SBS Chr9 12745542 G-A Homo INTERGENIC
SBS Chr10 19143797 T-C Homo INTERGENIC
SBS Chr10 23970128 C-T Homo SYNONYMOUS_CODING
SBS Chr11 9879046 C-A Hetero INTERGENIC
SBS Chr12 11856666 C-G Hetero INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3971987 3971989 2
Deletion Chr2 6789424 6789432 8
Deletion Chr1 9613040 9613046 6
Deletion Chr9 10749001 10783000 33999 2
Deletion Chr3 12641208 12641210 2
Deletion Chr2 14846563 14846567 4
Deletion Chr10 16079903 16079905 2
Deletion Chr1 20399653 20399655 2
Deletion Chr12 23749525 23749526 1
Deletion Chr3 25829053 25829055 2
Deletion Chr2 27739306 27739311 5
Deletion Chr1 31588677 31588678 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9650240 9650243 2
Insertion Chr3 24114556 24114559 2
Insertion Chr5 22200846 22200849 2
Insertion Chr6 8883848 8883850 1
Insertion Chr8 6758453 6758456 2
Insertion Chr5 29939081 29939084 2
Insertion Chr8 27931350 27931357 6
Insertion Chr8 27931350 27931357 6

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10751886 11436148 OsKitaake09g070850
Inversion Chr4 13062337 13467853
Inversion Chr4 13062341 13367431 OsKitaake04g064100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13309780	A-G	Homo	INTERGENIC
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr1	19889218	T-C	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr2	2591192	G-T	Homo	INTRON
SBS	Chr3	24783212	C-G	Hetero	INTERGENIC
SBS	Chr3	30436421	T-C	Homo	INTRON
SBS	Chr6	20615560	T-C	Hetero	INTERGENIC
SBS	Chr7	13384371	A-G	Homo	INTERGENIC
SBS	Chr8	16338855	A-T	Hetero	INTERGENIC
SBS	Chr8	16338863	A-G	Hetero	INTERGENIC
SBS	Chr8	16644873	T-A	Hetero	INTERGENIC
SBS	Chr8	16644874	C-A	Hetero	INTERGENIC
SBS	Chr9	2960457	A-G	Hetero	INTRON
SBS	Chr9	12745542	G-A	Homo	INTERGENIC
SBS	Chr10	19143797	T-C	Homo	INTERGENIC
SBS	Chr10	23970128	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	9879046	C-A	Hetero	INTERGENIC
SBS	Chr12	11856666	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3971987	3971989	2
Deletion	Chr2	6789424	6789432	8
Deletion	Chr1	9613040	9613046	6
Deletion	Chr9	10749001	10783000	33999	2
Deletion	Chr3	12641208	12641210	2
Deletion	Chr2	14846563	14846567	4
Deletion	Chr10	16079903	16079905	2
Deletion	Chr1	20399653	20399655	2
Deletion	Chr12	23749525	23749526	1
Deletion	Chr3	25829053	25829055	2
Deletion	Chr2	27739306	27739311	5
Deletion	Chr1	31588677	31588678	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10751886	11436148	OsKitaake09g070850
Inversion	Chr4	13062337	13467853
Inversion	Chr4	13062341	13367431	OsKitaake04g064100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes