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Mutant Information

Mutant Name	FN867-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN867-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1050160 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 21735282 A-T Homo INTRON
SBS Chr1 28045803 A-C Hetero UTR_3_PRIME
SBS Chr1 40676602 T-C Homo INTERGENIC
SBS Chr2 33155664 G-A Homo UTR_5_PRIME
SBS Chr3 8385508 C-A Hetero INTERGENIC
SBS Chr3 11672540 A-T Homo INTERGENIC
SBS Chr3 31812501 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g335900
SBS Chr4 1252700 G-T Hetero INTRON
SBS Chr4 3573431 C-T Homo INTERGENIC
SBS Chr4 23337527 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 26071837 C-T Hetero INTERGENIC
SBS Chr4 28660786 C-A Hetero INTERGENIC
SBS Chr4 28700555 C-T Homo INTERGENIC
SBS Chr4 29006843 C-T Hetero INTRON
SBS Chr5 28850794 T-C Hetero INTERGENIC
SBS Chr6 30728871 A-T Homo NON_SYNONYMOUS_CODING OsKitaake06g290300
SBS Chr7 14201368 C-A Hetero INTERGENIC
SBS Chr8 2657323 G-C Homo INTERGENIC
SBS Chr10 22526348 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g186100
SBS Chr11 188268 A-C Hetero INTERGENIC
SBS Chr11 15007152 G-T Hetero INTERGENIC
SBS Chr11 21317615 A-T Hetero INTERGENIC
SBS Chr12 4104211 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4271056 4271064 8
Deletion Chr2 4331199 4331216 17
Deletion Chr10 4826910 4826911 1
Deletion Chr12 11674297 11674298 1
Deletion Chr11 12522101 12522266 165
Deletion Chr2 13055539 13055543 4
Deletion Chr12 13586981 13586982 1
Deletion Chr7 13601064 13601070 6
Deletion Chr7 17638001 17683000 44999 4
Deletion Chr11 18182898 18182904 6
Deletion Chr2 19150795 19150796 1
Deletion Chr1 27037020 27037034 14
Deletion Chr7 28608201 28608208 7
Deletion Chr4 35568466 35568471 5
Deletion Chr1 38738346 38738396 50

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 2803976 2803979 2
Insertion Chr11 21924067 21924072 4
Insertion Chr6 6079 6081 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 23422405 23695984
Inversion Chr3 23423588 23695984
Inversion Chr2 28144628 28484420
Inversion Chr1 32554084 33275713
Inversion Chr1 32554097 33275724

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 10490207 Chr1 36656024 OsKitaake01g389600
Translocation Chr3 10490226 Chr1 36656266 OsKitaake01g389600
Translocation Chr10 20624430 Chr2 28144622 OsKitaake10g158200
Translocation Chr4 22381750 Chr1 36656272 2
Translocation Chr4 22381781 Chr1 36656989 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1050160	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	21735282	A-T	Homo	INTRON
SBS	Chr1	28045803	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	40676602	T-C	Homo	INTERGENIC
SBS	Chr2	33155664	G-A	Homo	UTR_5_PRIME
SBS	Chr3	8385508	C-A	Hetero	INTERGENIC
SBS	Chr3	11672540	A-T	Homo	INTERGENIC
SBS	Chr3	31812501	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g335900
SBS	Chr4	1252700	G-T	Hetero	INTRON
SBS	Chr4	3573431	C-T	Homo	INTERGENIC
SBS	Chr4	23337527	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	26071837	C-T	Hetero	INTERGENIC
SBS	Chr4	28660786	C-A	Hetero	INTERGENIC
SBS	Chr4	28700555	C-T	Homo	INTERGENIC
SBS	Chr4	29006843	C-T	Hetero	INTRON
SBS	Chr5	28850794	T-C	Hetero	INTERGENIC
SBS	Chr6	30728871	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g290300
SBS	Chr7	14201368	C-A	Hetero	INTERGENIC
SBS	Chr8	2657323	G-C	Homo	INTERGENIC
SBS	Chr10	22526348	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g186100
SBS	Chr11	188268	A-C	Hetero	INTERGENIC
SBS	Chr11	15007152	G-T	Hetero	INTERGENIC
SBS	Chr11	21317615	A-T	Hetero	INTERGENIC
SBS	Chr12	4104211	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4271056	4271064	8
Deletion	Chr2	4331199	4331216	17
Deletion	Chr10	4826910	4826911	1
Deletion	Chr12	11674297	11674298	1
Deletion	Chr11	12522101	12522266	165
Deletion	Chr2	13055539	13055543	4
Deletion	Chr12	13586981	13586982	1
Deletion	Chr7	13601064	13601070	6
Deletion	Chr7	17638001	17683000	44999	4
Deletion	Chr11	18182898	18182904	6
Deletion	Chr2	19150795	19150796	1
Deletion	Chr1	27037020	27037034	14
Deletion	Chr7	28608201	28608208	7
Deletion	Chr4	35568466	35568471	5
Deletion	Chr1	38738346	38738396	50

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	23422405	23695984
Inversion	Chr3	23423588	23695984
Inversion	Chr2	28144628	28484420
Inversion	Chr1	32554084	33275713
Inversion	Chr1	32554097	33275724

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes