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Mutant Information

Mutant Name	FN868-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN868-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5450507 G-T Hetero INTERGENIC
SBS Chr1 19557705 T-C Homo INTERGENIC
SBS Chr1 38049403 G-T Hetero INTRON
SBS Chr1 38992934 T-C Hetero UTR_3_PRIME
SBS Chr1 42182098 G-T Homo INTERGENIC
SBS Chr2 11606334 T-A Homo INTERGENIC
SBS Chr3 9208509 C-T Homo UTR_3_PRIME
SBS Chr4 1595099 T-C Homo INTERGENIC
SBS Chr4 11355549 C-A Hetero INTERGENIC
SBS Chr4 21452066 C-T Homo INTERGENIC
SBS Chr4 31709337 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g250700
SBS Chr4 31709338 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g250700
SBS Chr4 33711710 C-T Homo INTRON
SBS Chr4 36278704 C-G Homo INTERGENIC
SBS Chr6 30459342 C-T Hetero INTRON
SBS Chr7 3030597 A-G Hetero INTRON
SBS Chr7 7278625 G-T Hetero INTERGENIC
SBS Chr7 25102554 G-A Hetero INTERGENIC
SBS Chr7 26773270 G-C Hetero INTERGENIC
SBS Chr7 27635134 A-T Hetero INTERGENIC
SBS Chr7 27711633 G-A Hetero INTERGENIC
SBS Chr8 3384946 G-A Homo INTERGENIC
SBS Chr10 5873665 C-A Hetero INTERGENIC
SBS Chr10 14646673 G-A Hetero INTERGENIC
SBS Chr11 5197545 A-G Hetero INTERGENIC
SBS Chr11 10738689 C-A Hetero INTERGENIC
SBS Chr11 12311004 T-C Homo INTERGENIC
SBS Chr11 26119643 G-T Hetero INTERGENIC
SBS Chr11 26464550 T-G Hetero INTERGENIC
SBS Chr11 26464551 C-T Hetero INTERGENIC
SBS Chr12 9390122 A-C Homo INTERGENIC
SBS Chr12 16063002 G-A Homo INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr1 4053688 4054009 321
Deletion Chr10 4192483 4192487 4
Deletion Chr10 7183879 7183888 9
Deletion Chr12 9876659 9876805 146
Deletion Chr10 10203767 10203877 110
Deletion Chr5 11404902 11404912 10
Deletion Chr9 17767001 17767008 7
Deletion Chr12 19540066 19540067 1
Deletion Chr7 20686286 20686295 9
Deletion Chr5 20982968 20982975 7
Deletion Chr11 23234331 23234332 1
Deletion Chr5 25379826 25379835 9
Deletion Chr2 25558762 25558772 10
Deletion Chr1 29754320 29754328 8
Deletion Chr4 30297582 30297593 11
Deletion Chr1 33295815 33295816 1
Deletion Chr1 34626483 34626486 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19646939 19646942 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 20973798 Chr1 29043421 OsKitaake01g281901
Translocation Chr9 20973800 Chr1 29042429 OsKitaake01g281901
Translocation Chr11 23345734 Chr7 469783

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5450507	G-T	Hetero	INTERGENIC
SBS	Chr1	19557705	T-C	Homo	INTERGENIC
SBS	Chr1	38049403	G-T	Hetero	INTRON
SBS	Chr1	38992934	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	42182098	G-T	Homo	INTERGENIC
SBS	Chr2	11606334	T-A	Homo	INTERGENIC
SBS	Chr3	9208509	C-T	Homo	UTR_3_PRIME
SBS	Chr4	1595099	T-C	Homo	INTERGENIC
SBS	Chr4	11355549	C-A	Hetero	INTERGENIC
SBS	Chr4	21452066	C-T	Homo	INTERGENIC
SBS	Chr4	31709337	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g250700
SBS	Chr4	31709338	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g250700
SBS	Chr4	33711710	C-T	Homo	INTRON
SBS	Chr4	36278704	C-G	Homo	INTERGENIC
SBS	Chr6	30459342	C-T	Hetero	INTRON
SBS	Chr7	3030597	A-G	Hetero	INTRON
SBS	Chr7	7278625	G-T	Hetero	INTERGENIC
SBS	Chr7	25102554	G-A	Hetero	INTERGENIC
SBS	Chr7	26773270	G-C	Hetero	INTERGENIC
SBS	Chr7	27635134	A-T	Hetero	INTERGENIC
SBS	Chr7	27711633	G-A	Hetero	INTERGENIC
SBS	Chr8	3384946	G-A	Homo	INTERGENIC
SBS	Chr10	5873665	C-A	Hetero	INTERGENIC
SBS	Chr10	14646673	G-A	Hetero	INTERGENIC
SBS	Chr11	5197545	A-G	Hetero	INTERGENIC
SBS	Chr11	10738689	C-A	Hetero	INTERGENIC
SBS	Chr11	12311004	T-C	Homo	INTERGENIC
SBS	Chr11	26119643	G-T	Hetero	INTERGENIC
SBS	Chr11	26464550	T-G	Hetero	INTERGENIC
SBS	Chr11	26464551	C-T	Hetero	INTERGENIC
SBS	Chr12	9390122	A-C	Homo	INTERGENIC
SBS	Chr12	16063002	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr1	4053688	4054009	321
Deletion	Chr10	4192483	4192487	4
Deletion	Chr10	7183879	7183888	9
Deletion	Chr12	9876659	9876805	146
Deletion	Chr10	10203767	10203877	110
Deletion	Chr5	11404902	11404912	10
Deletion	Chr9	17767001	17767008	7
Deletion	Chr12	19540066	19540067	1
Deletion	Chr7	20686286	20686295	9
Deletion	Chr5	20982968	20982975	7
Deletion	Chr11	23234331	23234332	1
Deletion	Chr5	25379826	25379835	9
Deletion	Chr2	25558762	25558772	10
Deletion	Chr1	29754320	29754328	8
Deletion	Chr4	30297582	30297593	11
Deletion	Chr1	33295815	33295816	1
Deletion	Chr1	34626483	34626486	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	20973798	Chr1	29043421	OsKitaake01g281901
Translocation	Chr9	20973800	Chr1	29042429	OsKitaake01g281901
Translocation	Chr11	23345734	Chr7	469783

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes