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Mutant Information

Mutant Name	FN869-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN869-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 783156 T-A Homo UTR_3_PRIME
SBS Chr1 12944468 G-A Hetero INTERGENIC
SBS Chr1 20563796 G-A Hetero INTERGENIC
SBS Chr2 7342526 T-A Homo INTERGENIC
SBS Chr2 12952799 T-A Homo INTERGENIC
SBS Chr2 12952800 T-A Homo INTERGENIC
SBS Chr2 20186258 C-T Hetero INTERGENIC
SBS Chr3 6314312 T-C Hetero INTERGENIC
SBS Chr3 9592723 A-C Hetero INTERGENIC
SBS Chr3 10233166 G-A Hetero INTERGENIC
SBS Chr3 17169041 G-A Hetero INTERGENIC
SBS Chr3 17169042 G-T Hetero INTERGENIC
SBS Chr3 27377353 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g282400
SBS Chr3 32900632 T-C Hetero INTERGENIC
SBS Chr3 35695586 G-A Homo INTERGENIC
SBS Chr3 36250890 G-A Hetero INTRON
SBS Chr4 30664054 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 26732762 C-T Homo SYNONYMOUS_CODING
SBS Chr6 1292334 G-A Homo INTERGENIC
SBS Chr6 3350657 G-A Homo INTRON
SBS Chr7 2570286 C-T Hetero INTERGENIC
SBS Chr7 10829317 G-A Hetero INTERGENIC
SBS Chr9 1941606 T-C Hetero INTERGENIC
SBS Chr10 5204092 A-C Hetero INTERGENIC
SBS Chr10 11692793 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g069900
SBS Chr10 20499226 T-G Homo INTERGENIC
SBS Chr11 4953849 T-A Hetero UTR_3_PRIME
SBS Chr11 8636035 C-T Hetero INTERGENIC
SBS Chr11 14354877 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g120100
SBS Chr11 21347403 A-G Hetero INTERGENIC
SBS Chr11 22270852 A-T Hetero UTR_5_PRIME
SBS Chr12 18920342 G-C Hetero INTERGENIC
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 863248 863253 5
Deletion Chr6 1489111 1489117 6
Deletion Chr9 4551001 4551002 1 OsKitaake09g025900
Deletion Chr3 5593228 5593235 7
Deletion Chr8 7818871 7818872 1
Deletion Chr4 11736202 11736207 5
Deletion Chr10 12834913 12834915 2
Deletion Chr2 12970924 12970925 1
Deletion Chr5 14545755 14545757 2
Deletion Chr4 16029069 16029074 5
Deletion Chr12 16952735 16952738 3
Deletion Chr2 18735080 18735082 2
Deletion Chr4 20049038 20049050 12
Deletion Chr6 20530972 20530973 1 OsKitaake06g183900
Deletion Chr5 20922252 20922253 1
Deletion Chr11 22436710 22436711 1
Deletion Chr3 26027117 26027122 5
Deletion Chr12 26764383 26764385 2
Deletion Chr1 37565244 37565249 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13087880 13087883 2
Insertion Chr6 3314139 3314142 2
Insertion Chr7 2835537 2835540 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1077027 1405667
Inversion Chr1 1079438 1405675

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 13315629 Chr1 1783400
Translocation Chr9 13315652 Chr1 1778129
Translocation Chr2 30848964 Chr1 1783405
Translocation Chr2 30853868 Chr1 1778073 OsKitaake02g314800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	783156	T-A	Homo	UTR_3_PRIME
SBS	Chr1	12944468	G-A	Hetero	INTERGENIC
SBS	Chr1	20563796	G-A	Hetero	INTERGENIC
SBS	Chr2	7342526	T-A	Homo	INTERGENIC
SBS	Chr2	12952799	T-A	Homo	INTERGENIC
SBS	Chr2	12952800	T-A	Homo	INTERGENIC
SBS	Chr2	20186258	C-T	Hetero	INTERGENIC
SBS	Chr3	6314312	T-C	Hetero	INTERGENIC
SBS	Chr3	9592723	A-C	Hetero	INTERGENIC
SBS	Chr3	10233166	G-A	Hetero	INTERGENIC
SBS	Chr3	17169041	G-A	Hetero	INTERGENIC
SBS	Chr3	17169042	G-T	Hetero	INTERGENIC
SBS	Chr3	27377353	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g282400
SBS	Chr3	32900632	T-C	Hetero	INTERGENIC
SBS	Chr3	35695586	G-A	Homo	INTERGENIC
SBS	Chr3	36250890	G-A	Hetero	INTRON
SBS	Chr4	30664054	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	26732762	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	1292334	G-A	Homo	INTERGENIC
SBS	Chr6	3350657	G-A	Homo	INTRON
SBS	Chr7	2570286	C-T	Hetero	INTERGENIC
SBS	Chr7	10829317	G-A	Hetero	INTERGENIC
SBS	Chr9	1941606	T-C	Hetero	INTERGENIC
SBS	Chr10	5204092	A-C	Hetero	INTERGENIC
SBS	Chr10	11692793	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g069900
SBS	Chr10	20499226	T-G	Homo	INTERGENIC
SBS	Chr11	4953849	T-A	Hetero	UTR_3_PRIME
SBS	Chr11	8636035	C-T	Hetero	INTERGENIC
SBS	Chr11	14354877	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g120100
SBS	Chr11	21347403	A-G	Hetero	INTERGENIC
SBS	Chr11	22270852	A-T	Hetero	UTR_5_PRIME
SBS	Chr12	18920342	G-C	Hetero	INTERGENIC
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	863248	863253	5
Deletion	Chr6	1489111	1489117	6
Deletion	Chr9	4551001	4551002	1	OsKitaake09g025900
Deletion	Chr3	5593228	5593235	7
Deletion	Chr8	7818871	7818872	1
Deletion	Chr4	11736202	11736207	5
Deletion	Chr10	12834913	12834915	2
Deletion	Chr2	12970924	12970925	1
Deletion	Chr5	14545755	14545757	2
Deletion	Chr4	16029069	16029074	5
Deletion	Chr12	16952735	16952738	3
Deletion	Chr2	18735080	18735082	2
Deletion	Chr4	20049038	20049050	12
Deletion	Chr6	20530972	20530973	1	OsKitaake06g183900
Deletion	Chr5	20922252	20922253	1
Deletion	Chr11	22436710	22436711	1
Deletion	Chr3	26027117	26027122	5
Deletion	Chr12	26764383	26764385	2
Deletion	Chr1	37565244	37565249	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1077027	1405667
Inversion	Chr1	1079438	1405675

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes