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Mutant Information

Mutant Name	FN870-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN870-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15136117	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	18198338	G-T	Hetero	INTERGENIC
SBS	Chr2	12136586	A-G	Hetero	INTERGENIC
SBS	Chr2	30027886	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33994056	C-T	Hetero	INTERGENIC
SBS	Chr3	9896847	G-A	Homo	INTERGENIC
SBS	Chr4	16987640	C-T	Hetero	INTERGENIC
SBS	Chr4	29716074	G-A	Hetero	INTERGENIC
SBS	Chr5	650915	T-A	Homo	INTRON
SBS	Chr5	11401378	G-C	Hetero	INTERGENIC
SBS	Chr6	28701190	A-T	Homo	INTERGENIC
SBS	Chr7	15428480	G-A	Hetero	INTERGENIC
SBS	Chr7	22867353	G-A	Hetero	INTERGENIC
SBS	Chr8	627242	T-C	Hetero	INTERGENIC
SBS	Chr8	24153945	A-G	Homo	INTERGENIC
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	14459657	G-A	Homo	INTERGENIC
SBS	Chr9	20882823	T-A	Hetero	INTRON
SBS	Chr9	20882824	T-A	Hetero	INTRON
SBS	Chr9	21652150	T-C	Hetero	INTERGENIC
SBS	Chr10	8080960	G-C	Hetero	INTERGENIC
SBS	Chr10	9923276	A-T	Hetero	INTRON
SBS	Chr11	967579	C-G	Hetero	INTERGENIC
SBS	Chr11	2636146	A-G	Hetero	INTERGENIC
SBS	Chr11	10306999	T-A	Homo	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	19103183	G-A	Homo	INTERGENIC
SBS	Chr11	28653448	G-A	Hetero	INTERGENIC
SBS	Chr12	4563412	G-A	Hetero	INTRON
SBS	Chr12	7366494	C-T	Homo	INTERGENIC
SBS	Chr12	9860332	G-T	Homo	INTERGENIC
SBS	Chr12	14223485	A-T	Hetero	INTERGENIC
SBS	Chr12	14277832	C-G	Hetero	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	500464	500466	2
Deletion	Chr4	951160	951167	7
Deletion	Chr9	1287785	1287789	4
Deletion	Chr7	5470170	5470171	1	OsKitaake07g066600
Deletion	Chr6	6113418	6113419	1
Deletion	Chr12	7707943	7707946	3
Deletion	Chr2	7873802	7873803	1
Deletion	Chr5	12664350	12664356	6
Deletion	Chr1	14671001	14849000	177999	18
Deletion	Chr8	16815644	16815659	15
Deletion	Chr12	19141936	19141944	8
Deletion	Chr3	20598906	20598915	9
Deletion	Chr6	22839697	22839698	1
Deletion	Chr8	23690177	23690179	2
Deletion	Chr7	23756001	23804000	47999	8
Deletion	Chr12	24345221	24345223	2
Deletion	Chr5	25371664	25371665	1	OsKitaake05g221500
Deletion	Chr1	29595614	29595615	1
Deletion	Chr2	31154831	31154832	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	9480027	9480030	2
Insertion	Chr9	15121259	15121262	2
Insertion	Chr3	697741	697745	3

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4593391	Chr7	23806995	OsKitaake12g060800
Translocation	Chr12	4593395	Chr7	23802013	OsKitaake12g060800
Translocation	Chr7	15852631	Chr2	31114043	2
Translocation	Chr7	15854154	Chr2	31114038	2