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| Mutant Information |
|---|
| Mutant Name | FN871-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN871-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20382426 | G-A | Homo | INTRON | |
| SBS | Chr1 | 41615048 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30204983 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 7719760 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8659918 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 26661516 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 37700527 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 285571 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 2129422 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2904598 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7964998 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23185367 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25716243 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 7405550 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29914476 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18250935 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 18250936 | G-T | Hetero | INTRON | |
| SBS | Chr9 | 4661275 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 17981516 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g137500 |
| SBS | Chr9 | 21997614 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 21997640 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3457714 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7461609 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 12941568 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18792067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16943928 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2434307 | 2434309 | 2 | |
| Deletion | Chr6 | 4986642 | 4986643 | 1 | |
| Deletion | Chr7 | 11108596 | 11108597 | 1 | |
| Deletion | Chr1 | 11735798 | 11735800 | 2 | |
| Deletion | Chr12 | 14661150 | 14661151 | 1 | |
| Deletion | Chr4 | 20170823 | 20170833 | 10 | OsKitaake04g106700 |
| Deletion | Chr2 | 20659596 | 20659600 | 4 | |
| Deletion | Chr3 | 25334258 | 25334259 | 1 | |
| Deletion | Chr12 | 26723647 | 26723648 | 1 | |
| Deletion | Chr7 | 29339987 | 29339989 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 26029878 | 26029881 | 2 | |
| Insertion | Chr10 | 9683086 | 9683089 | 2 | |
| Insertion | Chr1 | 17222099 | 17222101 | 1 | |
| Insertion | Chr2 | 13850924 | 13850926 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 13089374 | 13286049 | |
| Inversion | Chr1 | 41042310 | 41694154 | |
| Inversion | Chr1 | 41042317 | 41694159 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3876683 | Chr1 | 15559608 | |
| Translocation | Chr10 | 3876694 | Chr1 | 15558134 |