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Mutant Information

Mutant Name	FN872-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN872-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5207241 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g068100
SBS Chr1 14384720 C-A Hetero INTRON
SBS Chr1 17161485 G-T Hetero INTERGENIC
SBS Chr1 34634445 G-T Hetero INTERGENIC
SBS Chr1 35792131 G-C Hetero INTERGENIC
SBS Chr2 4013141 G-T Hetero INTERGENIC
SBS Chr2 9219551 A-C Hetero SYNONYMOUS_CODING
SBS Chr2 13214175 G-C Homo UTR_3_PRIME
SBS Chr2 18611349 A-C Homo INTRON
SBS Chr2 27825502 G-A Homo INTERGENIC
SBS Chr4 5473196 C-G Homo INTERGENIC
SBS Chr4 19393202 C-T Homo INTERGENIC
SBS Chr4 21916111 G-A Hetero INTERGENIC
SBS Chr5 7079063 T-A Hetero INTERGENIC
SBS Chr5 24356798 C-T Hetero INTERGENIC
SBS Chr5 25014389 T-C Homo INTERGENIC
SBS Chr5 25122863 T-C Homo INTERGENIC
SBS Chr6 25868761 A-G Hetero UTR_5_PRIME
SBS Chr7 8467764 T-C Hetero INTERGENIC
SBS Chr7 22404803 C-T Hetero INTRON
SBS Chr7 22404804 G-T Hetero INTRON
SBS Chr7 28202425 A-G Hetero INTRON
SBS Chr7 28344478 A-T Hetero INTERGENIC
SBS Chr7 29580729 A-G Hetero INTERGENIC
SBS Chr9 9741582 T-C Hetero INTERGENIC
SBS Chr9 17969665 G-A Homo INTERGENIC
SBS Chr10 85315 A-T Hetero INTERGENIC
SBS Chr10 666663 C-A Hetero INTERGENIC
SBS Chr10 2596577 C-T Hetero INTERGENIC
SBS Chr10 13165178 A-G Homo INTERGENIC
SBS Chr10 18577415 A-T Homo INTERGENIC
SBS Chr10 18577416 G-T Homo INTERGENIC
SBS Chr11 3953999 C-T Hetero INTERGENIC
SBS Chr11 14923804 A-C Hetero INTERGENIC
SBS Chr12 16014799 A-C Homo INTERGENIC
SBS Chr12 17629556 G-A Hetero INTERGENIC
SBS Chr12 17629557 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 5304567 5304571 4
Deletion Chr4 5779212 5779213 1
Deletion Chr12 6497001 6510000 12999 4
Deletion Chr6 7169603 7169605 2
Deletion Chr4 11011298 11011309 11
Deletion Chr7 14030617 14030818 201 OsKitaake07g121100
Deletion Chr1 14506119 14506123 4
Deletion Chr1 15409205 15409272 67
Deletion Chr11 15786001 15805000 18999 OsKitaake11g126700
Deletion Chr6 16786828 16786829 1 OsKitaake06g158400
Deletion Chr4 19148615 19148618 3
Deletion Chr1 21414302 21414308 6 OsKitaake01g207764
Deletion Chr3 34351076 34351083 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1456913 1456918 4
Insertion Chr5 29873529 29873531 1
Insertion Chr7 5656390 5656393 2
Insertion Chr10 19740426 19740428 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 16165600 16514613
Inversion Chr6 29316321 29323622
Inversion Chr6 29316323 29323628

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 4776608 Chr7 3075345 2
Translocation Chr8 4777188 Chr7 3075340 2
Translocation Chr9 9756949 Chr8 21635291 OsKitaake09g059200
Translocation Chr9 9773273 Chr8 21635155
Translocation Chr8 13582642 Chr4 9661052

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5207241	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g068100
SBS	Chr1	14384720	C-A	Hetero	INTRON
SBS	Chr1	17161485	G-T	Hetero	INTERGENIC
SBS	Chr1	34634445	G-T	Hetero	INTERGENIC
SBS	Chr1	35792131	G-C	Hetero	INTERGENIC
SBS	Chr2	4013141	G-T	Hetero	INTERGENIC
SBS	Chr2	9219551	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	13214175	G-C	Homo	UTR_3_PRIME
SBS	Chr2	18611349	A-C	Homo	INTRON
SBS	Chr2	27825502	G-A	Homo	INTERGENIC
SBS	Chr4	5473196	C-G	Homo	INTERGENIC
SBS	Chr4	19393202	C-T	Homo	INTERGENIC
SBS	Chr4	21916111	G-A	Hetero	INTERGENIC
SBS	Chr5	7079063	T-A	Hetero	INTERGENIC
SBS	Chr5	24356798	C-T	Hetero	INTERGENIC
SBS	Chr5	25014389	T-C	Homo	INTERGENIC
SBS	Chr5	25122863	T-C	Homo	INTERGENIC
SBS	Chr6	25868761	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	8467764	T-C	Hetero	INTERGENIC
SBS	Chr7	22404803	C-T	Hetero	INTRON
SBS	Chr7	22404804	G-T	Hetero	INTRON
SBS	Chr7	28202425	A-G	Hetero	INTRON
SBS	Chr7	28344478	A-T	Hetero	INTERGENIC
SBS	Chr7	29580729	A-G	Hetero	INTERGENIC
SBS	Chr9	9741582	T-C	Hetero	INTERGENIC
SBS	Chr9	17969665	G-A	Homo	INTERGENIC
SBS	Chr10	85315	A-T	Hetero	INTERGENIC
SBS	Chr10	666663	C-A	Hetero	INTERGENIC
SBS	Chr10	2596577	C-T	Hetero	INTERGENIC
SBS	Chr10	13165178	A-G	Homo	INTERGENIC
SBS	Chr10	18577415	A-T	Homo	INTERGENIC
SBS	Chr10	18577416	G-T	Homo	INTERGENIC
SBS	Chr11	3953999	C-T	Hetero	INTERGENIC
SBS	Chr11	14923804	A-C	Hetero	INTERGENIC
SBS	Chr12	16014799	A-C	Homo	INTERGENIC
SBS	Chr12	17629556	G-A	Hetero	INTERGENIC
SBS	Chr12	17629557	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	5304567	5304571	4
Deletion	Chr4	5779212	5779213	1
Deletion	Chr12	6497001	6510000	12999	4
Deletion	Chr6	7169603	7169605	2
Deletion	Chr4	11011298	11011309	11
Deletion	Chr7	14030617	14030818	201	OsKitaake07g121100
Deletion	Chr1	14506119	14506123	4
Deletion	Chr1	15409205	15409272	67
Deletion	Chr11	15786001	15805000	18999	OsKitaake11g126700
Deletion	Chr6	16786828	16786829	1	OsKitaake06g158400
Deletion	Chr4	19148615	19148618	3
Deletion	Chr1	21414302	21414308	6	OsKitaake01g207764
Deletion	Chr3	34351076	34351083	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	16165600	16514613
Inversion	Chr6	29316321	29323622
Inversion	Chr6	29316323	29323628

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes