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Mutant Information

Mutant Name	FN873-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN873-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5367755 T-G Homo INTERGENIC
SBS Chr1 21656321 G-C Hetero INTERGENIC
SBS Chr1 22960707 T-A Hetero INTERGENIC
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr1 30188975 C-T Hetero INTERGENIC
SBS Chr1 35365563 G-A Homo SYNONYMOUS_CODING
SBS Chr2 2342666 C-A Hetero INTERGENIC
SBS Chr2 13315143 G-A Homo INTERGENIC
SBS Chr2 25348752 G-A Hetero INTERGENIC
SBS Chr2 26419760 C-T Homo INTERGENIC
SBS Chr2 27022244 T-G Homo INTERGENIC
SBS Chr3 506266 C-T Hetero INTERGENIC
SBS Chr3 8573036 G-A Hetero INTERGENIC
SBS Chr3 22389879 G-A Hetero INTERGENIC
SBS Chr3 26482959 T-A Hetero INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 24852057 G-T Hetero INTERGENIC
SBS Chr4 27238467 A-G Hetero INTERGENIC
SBS Chr4 29348803 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g223500
SBS Chr4 32332242 A-G Hetero INTERGENIC
SBS Chr6 3021419 A-C Homo INTERGENIC
SBS Chr6 21135150 G-A Hetero INTERGENIC
SBS Chr7 6009375 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g072300
SBS Chr7 8316640 C-T Hetero INTERGENIC
SBS Chr7 13658401 C-G Hetero INTERGENIC
SBS Chr7 15380892 T-C Hetero INTERGENIC
SBS Chr7 18924593 T-C Hetero INTERGENIC
SBS Chr7 19037345 C-T Hetero INTERGENIC
SBS Chr7 22925262 A-T Hetero INTRON
SBS Chr7 23972006 T-G Hetero UTR_5_PRIME
SBS Chr8 5878981 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g064100
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 15588385 G-A Hetero INTERGENIC
SBS Chr9 1946527 G-A Hetero INTERGENIC
SBS Chr9 2264295 C-T Hetero INTERGENIC
SBS Chr9 15841055 T-A Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr10 20401570 G-A Hetero INTERGENIC
SBS Chr11 20419981 T-G Homo INTRON
SBS Chr12 20385180 C-T Hetero INTRON
SBS Chr12 22116644 G-A Homo UTR_3_PRIME

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4888823 4888825 2
Deletion Chr11 5182386 5182391 5
Deletion Chr12 7663629 7663630 1
Deletion Chr6 11597171 11597180 9
Deletion Chr7 11643001 11784000 140999 6
Deletion Chr7 18299209 18299211 2 OsKitaake07g148000
Deletion Chr11 19125015 19125031 16
Deletion Chr10 19944789 19944795 6
Deletion Chr11 20732636 20732638 2
Deletion Chr7 21414109 21414116 7
Deletion Chr6 21919196 21919205 9
Deletion Chr5 22809292 22809294 2
Deletion Chr7 23485391 23485392 1 OsKitaake07g205700
Deletion Chr2 36689846 36689849 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 2596646 2596649 2
Insertion Chr8 3080123 3080128 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 20333820 20382157
Inversion Chr11 20382395 20750594 OsKitaake11g163500
Inversion Chr4 32394125 32906211
Inversion Chr4 32394130 32906217

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 20382164 Chr10 250185
Translocation Chr11 20382382 Chr10 249437

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5367755	T-G	Homo	INTERGENIC
SBS	Chr1	21656321	G-C	Hetero	INTERGENIC
SBS	Chr1	22960707	T-A	Hetero	INTERGENIC
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr1	30188975	C-T	Hetero	INTERGENIC
SBS	Chr1	35365563	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	2342666	C-A	Hetero	INTERGENIC
SBS	Chr2	13315143	G-A	Homo	INTERGENIC
SBS	Chr2	25348752	G-A	Hetero	INTERGENIC
SBS	Chr2	26419760	C-T	Homo	INTERGENIC
SBS	Chr2	27022244	T-G	Homo	INTERGENIC
SBS	Chr3	506266	C-T	Hetero	INTERGENIC
SBS	Chr3	8573036	G-A	Hetero	INTERGENIC
SBS	Chr3	22389879	G-A	Hetero	INTERGENIC
SBS	Chr3	26482959	T-A	Hetero	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Hetero	INTERGENIC
SBS	Chr4	27238467	A-G	Hetero	INTERGENIC
SBS	Chr4	29348803	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g223500
SBS	Chr4	32332242	A-G	Hetero	INTERGENIC
SBS	Chr6	3021419	A-C	Homo	INTERGENIC
SBS	Chr6	21135150	G-A	Hetero	INTERGENIC
SBS	Chr7	6009375	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g072300
SBS	Chr7	8316640	C-T	Hetero	INTERGENIC
SBS	Chr7	13658401	C-G	Hetero	INTERGENIC
SBS	Chr7	15380892	T-C	Hetero	INTERGENIC
SBS	Chr7	18924593	T-C	Hetero	INTERGENIC
SBS	Chr7	19037345	C-T	Hetero	INTERGENIC
SBS	Chr7	22925262	A-T	Hetero	INTRON
SBS	Chr7	23972006	T-G	Hetero	UTR_5_PRIME
SBS	Chr8	5878981	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g064100
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	15588385	G-A	Hetero	INTERGENIC
SBS	Chr9	1946527	G-A	Hetero	INTERGENIC
SBS	Chr9	2264295	C-T	Hetero	INTERGENIC
SBS	Chr9	15841055	T-A	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr10	20401570	G-A	Hetero	INTERGENIC
SBS	Chr11	20419981	T-G	Homo	INTRON
SBS	Chr12	20385180	C-T	Hetero	INTRON
SBS	Chr12	22116644	G-A	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4888823	4888825	2
Deletion	Chr11	5182386	5182391	5
Deletion	Chr12	7663629	7663630	1
Deletion	Chr6	11597171	11597180	9
Deletion	Chr7	11643001	11784000	140999	6
Deletion	Chr7	18299209	18299211	2	OsKitaake07g148000
Deletion	Chr11	19125015	19125031	16
Deletion	Chr10	19944789	19944795	6
Deletion	Chr11	20732636	20732638	2
Deletion	Chr7	21414109	21414116	7
Deletion	Chr6	21919196	21919205	9
Deletion	Chr5	22809292	22809294	2
Deletion	Chr7	23485391	23485392	1	OsKitaake07g205700
Deletion	Chr2	36689846	36689849	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	20333820	20382157
Inversion	Chr11	20382395	20750594	OsKitaake11g163500
Inversion	Chr4	32394125	32906211
Inversion	Chr4	32394130	32906217

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes