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Mutant Information

Mutant Name	FN875-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN875-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23882837 T-C Hetero INTERGENIC
SBS Chr1 25032461 T-A Homo INTERGENIC
SBS Chr1 27531447 C-A Homo INTERGENIC
SBS Chr1 27531448 G-A Homo INTERGENIC
SBS Chr2 9284168 G-C Hetero INTERGENIC
SBS Chr2 30440952 G-T Hetero INTERGENIC
SBS Chr2 30440953 G-A Hetero INTERGENIC
SBS Chr3 241745 G-A Hetero INTERGENIC
SBS Chr3 241746 G-A Hetero INTERGENIC
SBS Chr3 10494850 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g143700
SBS Chr3 19644465 C-T Hetero INTERGENIC
SBS Chr3 23033783 T-A Hetero INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr4 7772153 C-G Homo INTERGENIC
SBS Chr4 29180540 C-T Homo INTERGENIC
SBS Chr4 31845434 G-A Homo INTERGENIC
SBS Chr6 19928498 C-T Hetero INTERGENIC
SBS Chr7 15632546 G-T Hetero INTERGENIC
SBS Chr7 23879361 A-G Hetero INTERGENIC
SBS Chr8 6190754 C-T Hetero INTRON
SBS Chr8 15040256 C-A Hetero INTERGENIC
SBS Chr8 16848335 C-T Hetero INTERGENIC
SBS Chr8 20896258 A-G Hetero INTERGENIC
SBS Chr9 1600730 A-G Homo INTRON
SBS Chr9 6530277 G-C Homo INTERGENIC
SBS Chr9 15375279 G-A Hetero INTERGENIC
SBS Chr11 5736154 T-C Hetero INTERGENIC
SBS Chr11 20580472 A-T Homo INTERGENIC
SBS Chr12 7748559 C-G Hetero INTERGENIC
SBS Chr12 17561432 C-A Hetero INTRON
SBS Chr12 19126048 C-G Homo INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 20796 20797 1
Deletion Chr11 2323567 2323579 12
Deletion Chr12 4370788 4370790 2
Deletion Chr1 8610634 8610636 2
Deletion Chr4 13532001 13542000 9999
Deletion Chr10 13637094 13637098 4
Deletion Chr2 25057569 25057571 2
Deletion Chr5 25896405 25896407 2
Deletion Chr7 28139891 28139903 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 821856 821859 2
Insertion Chr7 27455798 27455801 2
Insertion Chr9 2754476 2754478 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 12863614 13483299 OsKitaake01g156700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10591893 Chr1 13483260 OsKitaake01g156700
Translocation Chr9 10600619 Chr1 12863608 OsKitaake09g066200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23882837	T-C	Hetero	INTERGENIC
SBS	Chr1	25032461	T-A	Homo	INTERGENIC
SBS	Chr1	27531447	C-A	Homo	INTERGENIC
SBS	Chr1	27531448	G-A	Homo	INTERGENIC
SBS	Chr2	9284168	G-C	Hetero	INTERGENIC
SBS	Chr2	30440952	G-T	Hetero	INTERGENIC
SBS	Chr2	30440953	G-A	Hetero	INTERGENIC
SBS	Chr3	241745	G-A	Hetero	INTERGENIC
SBS	Chr3	241746	G-A	Hetero	INTERGENIC
SBS	Chr3	10494850	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g143700
SBS	Chr3	19644465	C-T	Hetero	INTERGENIC
SBS	Chr3	23033783	T-A	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr4	7772153	C-G	Homo	INTERGENIC
SBS	Chr4	29180540	C-T	Homo	INTERGENIC
SBS	Chr4	31845434	G-A	Homo	INTERGENIC
SBS	Chr6	19928498	C-T	Hetero	INTERGENIC
SBS	Chr7	15632546	G-T	Hetero	INTERGENIC
SBS	Chr7	23879361	A-G	Hetero	INTERGENIC
SBS	Chr8	6190754	C-T	Hetero	INTRON
SBS	Chr8	15040256	C-A	Hetero	INTERGENIC
SBS	Chr8	16848335	C-T	Hetero	INTERGENIC
SBS	Chr8	20896258	A-G	Hetero	INTERGENIC
SBS	Chr9	1600730	A-G	Homo	INTRON
SBS	Chr9	6530277	G-C	Homo	INTERGENIC
SBS	Chr9	15375279	G-A	Hetero	INTERGENIC
SBS	Chr11	5736154	T-C	Hetero	INTERGENIC
SBS	Chr11	20580472	A-T	Homo	INTERGENIC
SBS	Chr12	7748559	C-G	Hetero	INTERGENIC
SBS	Chr12	17561432	C-A	Hetero	INTRON
SBS	Chr12	19126048	C-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	20796	20797	1
Deletion	Chr11	2323567	2323579	12
Deletion	Chr12	4370788	4370790	2
Deletion	Chr1	8610634	8610636	2
Deletion	Chr4	13532001	13542000	9999
Deletion	Chr10	13637094	13637098	4
Deletion	Chr2	25057569	25057571	2
Deletion	Chr5	25896405	25896407	2
Deletion	Chr7	28139891	28139903	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	12863614	13483299	OsKitaake01g156700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes