Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN876-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN876-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7874778 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30840255 | A-T | Homo | INTRON | |
| SBS | Chr2 | 12854868 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 22484958 | A-C | Homo | INTRON | |
| SBS | Chr2 | 23708263 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 4870933 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 16908899 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 34848502 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34154912 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 35028489 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 34491 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 5981921 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 9505088 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 15574784 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g129500 |
| SBS | Chr7 | 27592549 | T-G | Hetero | INTRON | |
| SBS | Chr9 | 7571058 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 9274251 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15725977 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 18960524 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 19212405 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 538302 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 538307 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 8761811 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 23039142 | C-T | Hetero | STOP_GAINED | OsKitaake10g193300 |
| SBS | Chr11 | 11834651 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 577769 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 22841177 | G-T | Hetero | UTR_3_PRIME |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 132276 | 132277 | 1 | |
| Deletion | Chr6 | 976031 | 976041 | 10 | |
| Deletion | Chr7 | 1003033 | 1003037 | 4 | |
| Deletion | Chr7 | 1290892 | 1290895 | 3 | |
| Deletion | Chr9 | 8153027 | 8153045 | 18 | |
| Deletion | Chr10 | 10338590 | 10338712 | 122 | |
| Deletion | Chr10 | 10438030 | 10438032 | 2 | |
| Deletion | Chr7 | 18378790 | 18378799 | 9 | |
| Deletion | Chr3 | 18818033 | 18818036 | 3 | |
| Deletion | Chr7 | 21112217 | 21112218 | 1 | |
| Deletion | Chr3 | 24458053 | 24458054 | 1 | |
| Deletion | Chr5 | 26147614 | 26147618 | 4 | OsKitaake05g231300 |
| Deletion | Chr8 | 27952749 | 27952751 | 2 | |
| Deletion | Chr1 | 30931007 | 30931009 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 17828325 | 17828327 | 1 | OsKitaake09g135400  |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 6073712 | 6073958 | OsKitaake08g065300 |
| Inversion | Chr4 | 26630184 | 26661421 | OsKitaake04g191600 |
| Inversion | Chr4 | 26630190 | 26661425 | OsKitaake04g191600 |