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| Mutant Information |
|---|
| Mutant Name | FN879-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN879-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11852995 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14745448 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 23958823 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 37852442 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43897435 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 11741019 | C-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18576996 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16595044 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17637605 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 418008 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 18523309 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14689586 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14689591 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 16821697 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 18732335 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18649430 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18649434 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 18663157 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18663158 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 24177398 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 29334038 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 4949795 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25102969 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 26172351 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 13724548 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 21412258 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 12171314 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 23359345 | A-G | Homo | INTRON | |
| SBS | Chr11 | 1857490 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 19339793 | C-T | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1384650 | 1384660 | 10 | |
| Deletion | Chr5 | 3161895 | 3161900 | 5 | |
| Deletion | Chr9 | 6847941 | 6847942 | 1 | |
| Deletion | Chr2 | 10266413 | 10266415 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 1880697 | 1880700 | 2 | |
| Insertion | Chr7 | 26345964 | 26345967 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 27374981 | 27499486 | OsKitaake05g250200 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8185784 | Chr7 | 23077065 | |
| Translocation | Chr12 | 13650730 | Chr1 | 43982500 | OsKitaake01g490400 |
| Translocation | Chr12 | 13650914 | Chr1 | 43982508 | OsKitaake01g490400 |
| Translocation | Chr2 | 14976550 | Chr1 | 42994908 | OsKitaake01g474400 |
| Translocation | Chr2 | 14976554 | Chr1 | 42994481 | |
| Translocation | Chr10 | 18440456 | Chr7 | 23134068 |