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Mutant Information

Mutant Name	FN880-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN880-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 33815959 A-G Hetero INTRON
SBS Chr2 4559739 C-A Hetero INTERGENIC
SBS Chr2 11887866 G-A Hetero INTERGENIC
SBS Chr2 15009019 T-G Hetero INTERGENIC
SBS Chr2 24589200 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 33848051 T-G Hetero INTRON
SBS Chr3 12656982 C-T Hetero INTRON
SBS Chr3 31274664 G-A Hetero INTRON
SBS Chr3 36270699 C-T Homo INTERGENIC
SBS Chr4 707451 A-G Hetero INTRON
SBS Chr4 20547409 G-C Hetero INTERGENIC
SBS Chr4 28108123 C-T Hetero INTERGENIC
SBS Chr5 14443426 T-C Hetero INTERGENIC
SBS Chr5 30093431 G-A Hetero INTERGENIC
SBS Chr6 9868945 C-T Hetero INTERGENIC
SBS Chr6 10561440 C-G Hetero INTERGENIC
SBS Chr6 18731263 A-T Hetero INTERGENIC
SBS Chr7 6205137 G-A Hetero INTERGENIC
SBS Chr7 23320600 A-T Hetero UTR_5_PRIME
SBS Chr8 15199145 G-T Hetero INTRON
SBS Chr8 18955364 G-A Hetero INTRON
SBS Chr9 12496090 A-G Hetero INTERGENIC
SBS Chr10 12478779 A-T Hetero INTRON
SBS Chr11 7932214 T-G Hetero INTERGENIC
SBS Chr11 8397109 C-T Hetero INTERGENIC
SBS Chr11 14706101 C-T Hetero INTRON
SBS Chr11 27145794 A-G Hetero INTERGENIC
SBS Chr11 28752317 G-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 457855 457856 1 OsKitaake09g003700
Deletion Chr7 8808515 8808517 2
Deletion Chr1 9403648 9403649 1
Deletion Chr7 10622903 10622905 2
Deletion Chr10 14047001 14073000 25999 OsKitaake10g087200
Deletion Chr1 14439362 14439368 6
Deletion Chr5 15447051 15447059 8
Deletion Chr3 25749001 25888000 138999 17
Deletion Chr1 40512993 40513007 14

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16036785 16036788 2
Insertion Chr1 19377850 19377853 2
Insertion Chr2 5419247 5419250 2
Insertion Chr6 30902691 30902696 4
Insertion Chr8 3379496 3379499 2
Insertion Chr8 4567967 4567969 1
Insertion Chr11 4111498 4111501 2
Insertion Chr5 30258973 30258975 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	33815959	A-G	Hetero	INTRON
SBS	Chr2	4559739	C-A	Hetero	INTERGENIC
SBS	Chr2	11887866	G-A	Hetero	INTERGENIC
SBS	Chr2	15009019	T-G	Hetero	INTERGENIC
SBS	Chr2	24589200	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	33848051	T-G	Hetero	INTRON
SBS	Chr3	12656982	C-T	Hetero	INTRON
SBS	Chr3	31274664	G-A	Hetero	INTRON
SBS	Chr3	36270699	C-T	Homo	INTERGENIC
SBS	Chr4	707451	A-G	Hetero	INTRON
SBS	Chr4	20547409	G-C	Hetero	INTERGENIC
SBS	Chr4	28108123	C-T	Hetero	INTERGENIC
SBS	Chr5	14443426	T-C	Hetero	INTERGENIC
SBS	Chr5	30093431	G-A	Hetero	INTERGENIC
SBS	Chr6	9868945	C-T	Hetero	INTERGENIC
SBS	Chr6	10561440	C-G	Hetero	INTERGENIC
SBS	Chr6	18731263	A-T	Hetero	INTERGENIC
SBS	Chr7	6205137	G-A	Hetero	INTERGENIC
SBS	Chr7	23320600	A-T	Hetero	UTR_5_PRIME
SBS	Chr8	15199145	G-T	Hetero	INTRON
SBS	Chr8	18955364	G-A	Hetero	INTRON
SBS	Chr9	12496090	A-G	Hetero	INTERGENIC
SBS	Chr10	12478779	A-T	Hetero	INTRON
SBS	Chr11	7932214	T-G	Hetero	INTERGENIC
SBS	Chr11	8397109	C-T	Hetero	INTERGENIC
SBS	Chr11	14706101	C-T	Hetero	INTRON
SBS	Chr11	27145794	A-G	Hetero	INTERGENIC
SBS	Chr11	28752317	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	457855	457856	1	OsKitaake09g003700
Deletion	Chr7	8808515	8808517	2
Deletion	Chr1	9403648	9403649	1
Deletion	Chr7	10622903	10622905	2
Deletion	Chr10	14047001	14073000	25999	OsKitaake10g087200
Deletion	Chr1	14439362	14439368	6
Deletion	Chr5	15447051	15447059	8
Deletion	Chr3	25749001	25888000	138999	17
Deletion	Chr1	40512993	40513007	14

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes