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| Mutant Information |
|---|
| Mutant Name | FN884-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN884-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1265138 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 3813301 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 7405031 | A-T | Homo | INTRON | |
| SBS | Chr2 | 24660273 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 35967490 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 19111611 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11090619 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 25016880 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1931134 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 10131839 | T-A | Homo | INTRON | |
| SBS | Chr6 | 18729097 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7756952 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 13748818 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 12717827 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 6779778 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2000695 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 4991303 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 23637082 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21097495 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21363342 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25412691 | C-T | Hetero | STOP_GAINED | OsKitaake11g204400 |
| SBS | Chr12 | 13170976 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 15238112 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 16225212 | C-T | Hetero | INTRON |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 6301112 | 6301120 | 8 | |
| Deletion | Chr4 | 6378295 | 6378296 | 1 | |
| Deletion | Chr10 | 7035651 | 7035653 | 2 | |
| Deletion | Chr11 | 7671249 | 7671259 | 10 | OsKitaake11g086000 |
| Deletion | Chr12 | 9611428 | 9611429 | 1 | |
| Deletion | Chr7 | 14595330 | 14595336 | 6 | |
| Deletion | Chr7 | 15045027 | 15045042 | 15 | |
| Deletion | Chr10 | 18921905 | 18921908 | 3 | |
| Deletion | Chr11 | 20607688 | 20607690 | 2 | |
| Deletion | Chr3 | 20961423 | 20961424 | 1 | |
| Deletion | Chr6 | 21271616 | 21271617 | 1 | OsKitaake06g188500 |
| Deletion | Chr5 | 23223480 | 23223481 | 1 | |
| Deletion | Chr2 | 26539847 | 26539848 | 1 | OsKitaake02g265300 |
| Deletion | Chr11 | 29577933 | 29577940 | 7 | |
| Deletion | Chr1 | 32343286 | 32343289 | 3 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 14086390 | 14086393 | 2 | |
| Insertion | Chr5 | 10666261 | 10666264 | 2 | |
| Insertion | Chr6 | 1061584 | 1061587 | 2 | |
| Insertion | Chr10 | 11980450 | 11980453 | 2 |