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| Mutant Information |
|---|
| Mutant Name | FN885-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN885-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21616904 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 2581264 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4653026 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 7343395 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 20699628 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 24452022 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25763484 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34602044 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 10097479 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18973207 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27172138 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 34406835 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 34425196 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 4494543 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27103828 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29293299 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g222800 |
| SBS | Chr5 | 6810426 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22912694 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 23715259 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 6802870 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 12843757 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16515429 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 16515430 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22282460 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 5310208 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g064700 |
| SBS | Chr7 | 10529822 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 3835949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8561695 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 10473853 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 19969046 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 8489738 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g050100 |
| SBS | Chr11 | 7076595 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11119829 | A-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9289452 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18989312 | T-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 358236 | 358237 | 1 | OsKitaake11g003300 |
| Deletion | Chr1 | 1001641 | 1001642 | 1 | |
| Deletion | Chr2 | 3232119 | 3232127 | 8 | |
| Deletion | Chr11 | 7663265 | 7663281 | 16 | |
| Deletion | Chr2 | 11348137 | 11348138 | 1 | |
| Deletion | Chr5 | 12356512 | 12356513 | 1 | |
| Deletion | Chr12 | 13122189 | 13122193 | 4 | |
| Deletion | Chr5 | 14284641 | 14284787 | 146 | |
| Deletion | Chr12 | 22101895 | 22101897 | 2 | |
| Deletion | Chr1 | 22611867 | 22611870 | 3 | |
| Deletion | Chr4 | 31920794 | 31920795 | 1 |
Insertions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 6547873 | 6547876 | 2 | |
| Insertion | Chr6 | 27159804 | 27159815 | 10 | |
| Insertion | Chr8 | 615099 | 615104 | 4 | |
| Insertion | Chr12 | 19933620 | 19933623 | 2 | |
| Insertion | Chr1 | 17339452 | 17339455 | 2 | OsKitaake01g178800  |
| Insertion | Chr3 | 22492942 | 22492944 | 1 | |
| Insertion | Chr6 | 11349 | 11351 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 2193949 | Chr2 | 37041799 | 2 |
| Translocation | Chr6 | 2194695 | Chr2 | 37041802 | 2 |