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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN887-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN887-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13965092 C-T Hetero INTERGENIC
SBS Chr1 23427496 A-G Hetero INTRON
SBS Chr1 35537733 G-T Hetero INTERGENIC
SBS Chr2 257191 T-A Homo INTERGENIC
SBS Chr2 27530397 C-T Homo INTERGENIC
SBS Chr3 12745454 C-G Hetero INTERGENIC
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr5 577712 C-T Hetero UTR_3_PRIME
SBS Chr5 4280325 G-A Hetero INTERGENIC
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr6 28340644 C-G Hetero INTERGENIC
SBS Chr7 3340679 T-A Hetero INTERGENIC
SBS Chr7 3910013 A-T Hetero INTERGENIC
SBS Chr7 6182519 C-T Hetero INTERGENIC
SBS Chr7 8242188 G-A Homo INTRON
SBS Chr7 27401482 T-C Hetero INTERGENIC
SBS Chr7 29406969 G-T Hetero INTERGENIC
SBS Chr8 8546244 T-C Homo INTERGENIC
SBS Chr9 1478693 A-G Hetero INTERGENIC
SBS Chr9 8180136 G-A Homo INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 6203375 C-T Hetero INTERGENIC
SBS Chr10 9634803 C-T Hetero INTERGENIC
SBS Chr10 11218860 T-A Hetero INTERGENIC
SBS Chr10 20802175 A-G Hetero INTRON
SBS Chr10 20929388 G-T Hetero INTERGENIC
SBS Chr10 21106858 T-A Hetero INTERGENIC
SBS Chr11 2340094 A-T Hetero INTERGENIC
SBS Chr11 2340095 C-T Hetero INTERGENIC
SBS Chr11 9810454 C-A Homo INTERGENIC
SBS Chr12 902070 C-T Hetero INTERGENIC
SBS Chr12 24628125 T-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 293350 293356 6
Deletion Chr5 577546 577550 4
Deletion Chr5 2817906 2817921 15
Deletion Chr10 3971854 3971855 1
Deletion Chr8 6078045 6078046 1
Deletion Chr1 8573333 8573336 3
Deletion Chr11 9388158 9388164 6
Deletion Chr9 9668487 9668490 3
Deletion Chr6 10626358 10626365 7
Deletion Chr10 11610731 11610732 1
Deletion Chr8 12165715 12165716 1
Deletion Chr4 12875118 12875130 12 OsKitaake04g061400
Deletion Chr2 13307353 13307354 1
Deletion Chr11 14870310 14870331 21
Deletion Chr7 19345971 19345974 3
Deletion Chr6 22660155 22660163 8
Deletion Chr1 23692627 23692628 1
Deletion Chr1 23944171 23944172 1
Deletion Chr3 32580580 32580583 3
Deletion Chr2 35295668 35295671 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43148451 43148454 2
Insertion Chr3 7585156 7585159 2
Insertion Chr6 12882510 12882515 4
Insertion Chr8 3525796 3525799 2
Insertion Chr11 22088660 22088663 2 OsKitaake11g174400

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 27581576 27584470 2
Inversion Chr7 27581583 27584478 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 11479762 Chr2 4256721 2
Translocation Chr4 12178282 Chr1 34244783
Translocation Chr4 12178606 Chr1 34244782
Translocation Chr9 13068815 Chr2 4256721 OsKitaake02g060100
Translocation Chr9 13071779 Chr2 4256706 OsKitaake02g060100
Translocation Chr4 16058539 Chr2 27603634 OsKitaake02g277500
Translocation Chr4 16058723 Chr2 27603720 OsKitaake02g277500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13965092	C-T	Hetero	INTERGENIC
SBS	Chr1	23427496	A-G	Hetero	INTRON
SBS	Chr1	35537733	G-T	Hetero	INTERGENIC
SBS	Chr2	257191	T-A	Homo	INTERGENIC
SBS	Chr2	27530397	C-T	Homo	INTERGENIC
SBS	Chr3	12745454	C-G	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr5	577712	C-T	Hetero	UTR_3_PRIME
SBS	Chr5	4280325	G-A	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr6	28340644	C-G	Hetero	INTERGENIC
SBS	Chr7	3340679	T-A	Hetero	INTERGENIC
SBS	Chr7	3910013	A-T	Hetero	INTERGENIC
SBS	Chr7	6182519	C-T	Hetero	INTERGENIC
SBS	Chr7	8242188	G-A	Homo	INTRON
SBS	Chr7	27401482	T-C	Hetero	INTERGENIC
SBS	Chr7	29406969	G-T	Hetero	INTERGENIC
SBS	Chr8	8546244	T-C	Homo	INTERGENIC
SBS	Chr9	1478693	A-G	Hetero	INTERGENIC
SBS	Chr9	8180136	G-A	Homo	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	6203375	C-T	Hetero	INTERGENIC
SBS	Chr10	9634803	C-T	Hetero	INTERGENIC
SBS	Chr10	11218860	T-A	Hetero	INTERGENIC
SBS	Chr10	20802175	A-G	Hetero	INTRON
SBS	Chr10	20929388	G-T	Hetero	INTERGENIC
SBS	Chr10	21106858	T-A	Hetero	INTERGENIC
SBS	Chr11	2340094	A-T	Hetero	INTERGENIC
SBS	Chr11	2340095	C-T	Hetero	INTERGENIC
SBS	Chr11	9810454	C-A	Homo	INTERGENIC
SBS	Chr12	902070	C-T	Hetero	INTERGENIC
SBS	Chr12	24628125	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	293350	293356	6
Deletion	Chr5	577546	577550	4
Deletion	Chr5	2817906	2817921	15
Deletion	Chr10	3971854	3971855	1
Deletion	Chr8	6078045	6078046	1
Deletion	Chr1	8573333	8573336	3
Deletion	Chr11	9388158	9388164	6
Deletion	Chr9	9668487	9668490	3
Deletion	Chr6	10626358	10626365	7
Deletion	Chr10	11610731	11610732	1
Deletion	Chr8	12165715	12165716	1
Deletion	Chr4	12875118	12875130	12	OsKitaake04g061400
Deletion	Chr2	13307353	13307354	1
Deletion	Chr11	14870310	14870331	21
Deletion	Chr7	19345971	19345974	3
Deletion	Chr6	22660155	22660163	8
Deletion	Chr1	23692627	23692628	1
Deletion	Chr1	23944171	23944172	1
Deletion	Chr3	32580580	32580583	3
Deletion	Chr2	35295668	35295671	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	27581576	27584470	2
Inversion	Chr7	27581583	27584478	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes