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Mutant Information

Mutant Name	FN890-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN890-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3858990 G-A Hetero INTERGENIC
SBS Chr1 12832442 A-G Hetero INTRON
SBS Chr1 23935744 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g230100
SBS Chr2 12735279 T-C Hetero INTERGENIC
SBS Chr2 15954728 C-T Homo INTERGENIC
SBS Chr2 22957645 G-C Hetero INTERGENIC
SBS Chr2 25145532 G-T Homo INTERGENIC
SBS Chr3 5875284 G-A Homo INTERGENIC
SBS Chr3 5875285 T-A Homo INTERGENIC
SBS Chr3 9843009 A-G Hetero INTERGENIC
SBS Chr3 17379008 G-A Hetero INTERGENIC
SBS Chr3 23012187 G-C Hetero INTRON
SBS Chr3 31688495 C-T Hetero INTERGENIC
SBS Chr4 10955922 T-C Homo INTERGENIC
SBS Chr4 14603415 G-A Hetero INTERGENIC
SBS Chr4 23850974 G-A Hetero INTERGENIC
SBS Chr4 35491278 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g301600
SBS Chr4 36208119 G-T Hetero UTR_5_PRIME
SBS Chr5 20091755 G-A Hetero INTERGENIC
SBS Chr6 15673443 C-T Hetero INTERGENIC
SBS Chr6 20900325 C-T Hetero INTERGENIC
SBS Chr6 22942831 G-A Hetero INTERGENIC
SBS Chr6 22942850 G-A Hetero INTERGENIC
SBS Chr6 27906586 G-A Hetero INTERGENIC
SBS Chr7 8285589 A-G Hetero INTERGENIC
SBS Chr7 12158409 T-C Hetero INTERGENIC
SBS Chr8 2722459 A-T Hetero INTERGENIC
SBS Chr8 2722463 C-T Hetero INTERGENIC
SBS Chr8 5687900 T-G Hetero INTERGENIC
SBS Chr8 5748101 T-G Hetero INTERGENIC
SBS Chr8 11829470 T-A Hetero INTRON
SBS Chr8 24427868 A-G Homo INTERGENIC
SBS Chr11 15295156 C-T Homo INTERGENIC
SBS Chr11 27846502 A-T Homo INTERGENIC
SBS Chr12 3558725 T-C Hetero INTERGENIC
SBS Chr12 9290764 C-T Hetero INTERGENIC
SBS Chr12 16954862 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2309906 2309915 9
Deletion Chr6 7296613 7296614 1
Deletion Chr9 8380656 8380658 2
Deletion Chr5 10185001 10466000 280999
Deletion Chr4 10645491 10645503 12
Deletion Chr3 15226880 15226882 2
Deletion Chr5 16002768 16002874 106
Deletion Chr2 16037440 16037441 1
Deletion Chr8 17023001 17071000 47999 6
Deletion Chr5 20091001 20149000 57999 6
Deletion Chr4 21116001 21138000 21999 2
Deletion Chr8 24269499 24269501 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 17285794 17285798 3
Insertion Chr4 23355941 23355944 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 20014761 20093517 OsKitaake05g158900
Inversion Chr5 20148438 20150614 OsKitaake05g160400
Inversion Chr8 23428748 23760829
Inversion Chr8 23428757 23761041

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 21116776 Chr2 34140839 OsKitaake02g354400
Translocation Chr4 21138345 Chr2 34140589 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3858990	G-A	Hetero	INTERGENIC
SBS	Chr1	12832442	A-G	Hetero	INTRON
SBS	Chr1	23935744	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g230100
SBS	Chr2	12735279	T-C	Hetero	INTERGENIC
SBS	Chr2	15954728	C-T	Homo	INTERGENIC
SBS	Chr2	22957645	G-C	Hetero	INTERGENIC
SBS	Chr2	25145532	G-T	Homo	INTERGENIC
SBS	Chr3	5875284	G-A	Homo	INTERGENIC
SBS	Chr3	5875285	T-A	Homo	INTERGENIC
SBS	Chr3	9843009	A-G	Hetero	INTERGENIC
SBS	Chr3	17379008	G-A	Hetero	INTERGENIC
SBS	Chr3	23012187	G-C	Hetero	INTRON
SBS	Chr3	31688495	C-T	Hetero	INTERGENIC
SBS	Chr4	10955922	T-C	Homo	INTERGENIC
SBS	Chr4	14603415	G-A	Hetero	INTERGENIC
SBS	Chr4	23850974	G-A	Hetero	INTERGENIC
SBS	Chr4	35491278	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g301600
SBS	Chr4	36208119	G-T	Hetero	UTR_5_PRIME
SBS	Chr5	20091755	G-A	Hetero	INTERGENIC
SBS	Chr6	15673443	C-T	Hetero	INTERGENIC
SBS	Chr6	20900325	C-T	Hetero	INTERGENIC
SBS	Chr6	22942831	G-A	Hetero	INTERGENIC
SBS	Chr6	22942850	G-A	Hetero	INTERGENIC
SBS	Chr6	27906586	G-A	Hetero	INTERGENIC
SBS	Chr7	8285589	A-G	Hetero	INTERGENIC
SBS	Chr7	12158409	T-C	Hetero	INTERGENIC
SBS	Chr8	2722459	A-T	Hetero	INTERGENIC
SBS	Chr8	2722463	C-T	Hetero	INTERGENIC
SBS	Chr8	5687900	T-G	Hetero	INTERGENIC
SBS	Chr8	5748101	T-G	Hetero	INTERGENIC
SBS	Chr8	11829470	T-A	Hetero	INTRON
SBS	Chr8	24427868	A-G	Homo	INTERGENIC
SBS	Chr11	15295156	C-T	Homo	INTERGENIC
SBS	Chr11	27846502	A-T	Homo	INTERGENIC
SBS	Chr12	3558725	T-C	Hetero	INTERGENIC
SBS	Chr12	9290764	C-T	Hetero	INTERGENIC
SBS	Chr12	16954862	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2309906	2309915	9
Deletion	Chr6	7296613	7296614	1
Deletion	Chr9	8380656	8380658	2
Deletion	Chr5	10185001	10466000	280999
Deletion	Chr4	10645491	10645503	12
Deletion	Chr3	15226880	15226882	2
Deletion	Chr5	16002768	16002874	106
Deletion	Chr2	16037440	16037441	1
Deletion	Chr8	17023001	17071000	47999	6
Deletion	Chr5	20091001	20149000	57999	6
Deletion	Chr4	21116001	21138000	21999	2
Deletion	Chr8	24269499	24269501	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	20014761	20093517	OsKitaake05g158900
Inversion	Chr5	20148438	20150614	OsKitaake05g160400
Inversion	Chr8	23428748	23760829
Inversion	Chr8	23428757	23761041

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes