Search Kitaake

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN891-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN891-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28443574 C-G Hetero INTERGENIC
SBS Chr2 4329590 A-C Hetero INTERGENIC
SBS Chr2 4877358 A-G Hetero UTR_3_PRIME
SBS Chr2 12963518 A-G Hetero INTRON
SBS Chr2 13793146 C-T Hetero INTERGENIC
SBS Chr2 17061520 C-T Hetero INTERGENIC
SBS Chr2 20676107 T-A Hetero INTERGENIC
SBS Chr2 21216974 T-G Hetero INTERGENIC
SBS Chr3 13901569 A-G Homo INTERGENIC
SBS Chr4 7983302 A-G Hetero INTERGENIC
SBS Chr5 4008917 G-A Hetero INTERGENIC
SBS Chr5 4008918 G-A Hetero INTERGENIC
SBS Chr5 8439261 G-A Homo INTERGENIC
SBS Chr5 15825413 A-G Homo INTERGENIC
SBS Chr5 18624140 A-T Homo INTERGENIC
SBS Chr6 3891141 G-C Hetero UTR_5_PRIME
SBS Chr6 5459117 C-T Hetero INTERGENIC
SBS Chr6 5459118 A-T Hetero INTERGENIC
SBS Chr6 9944139 C-T Homo INTERGENIC
SBS Chr6 16756420 G-T Hetero INTERGENIC
SBS Chr6 24347315 A-T Homo INTERGENIC
SBS Chr7 2616240 A-G Homo INTERGENIC
SBS Chr7 10537403 T-C Hetero INTERGENIC
SBS Chr7 25447763 G-A Hetero INTERGENIC
SBS Chr7 28829371 A-G Hetero INTERGENIC
SBS Chr8 413127 C-T Hetero INTERGENIC
SBS Chr8 11899533 G-A Hetero INTERGENIC
SBS Chr8 11899552 G-T Hetero INTERGENIC
SBS Chr9 3457533 C-T Hetero INTRON
SBS Chr9 4877116 G-C Hetero INTERGENIC
SBS Chr9 19816889 A-G Homo INTRON
SBS Chr9 22272496 T-A Homo INTRON
SBS Chr10 17345077 C-T Hetero INTERGENIC
SBS Chr11 553584 G-C Hetero INTERGENIC
SBS Chr11 11430298 A-T Hetero INTERGENIC
SBS Chr11 15243897 C-A Hetero INTERGENIC
SBS Chr11 19238772 C-G Hetero INTERGENIC
SBS Chr11 25592665 T-C Hetero INTERGENIC
SBS Chr12 4962295 T-G Hetero INTRON
SBS Chr12 16240655 T-C Homo INTERGENIC
SBS Chr12 25342292 G-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1732376 1732389 13
Deletion Chr3 4791134 4791136 2
Deletion Chr8 4864103 4864104 1
Deletion Chr11 4895409 4895413 4
Deletion Chr12 4918001 4956000 37999 4
Deletion Chr12 8831590 8831592 2
Deletion Chr10 10597481 10597492 11 OsKitaake10g062800
Deletion Chr10 12431581 12431583 2
Deletion Chr9 16734946 16734956 10
Deletion Chr8 20236280 20236289 9 OsKitaake08g149050
Deletion Chr4 20380041 20380043 2
Deletion Chr12 20734708 20734710 2
Deletion Chr2 21229561 21229562 1
Deletion Chr2 22060001 22071000 10999 OsKitaake02g214600
Deletion Chr9 22263359 22263360 1
Deletion Chr1 24810632 24810633 1
Deletion Chr4 32462878 32462880 2
Deletion Chr1 33799208 33799213 5
Deletion Chr1 38819716 38819718 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26662393 26662396 2
Insertion Chr5 5109689 5109692 2
Insertion Chr7 3512595 3512599 3
Insertion Chr12 7589831 7589834 2
Insertion Chr1 8263843 8263846 2
Insertion Chr2 36579018 36579020 1 OsKitaake02g389100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 11384696 Chr5 27427680 OsKitaake05g248900
Translocation Chr7 11384806 Chr5 27427754 OsKitaake05g248900
Translocation Chr11 19636346 Chr2 34355201 2
Translocation Chr11 19636364 Chr2 34356262 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28443574	C-G	Hetero	INTERGENIC
SBS	Chr2	4329590	A-C	Hetero	INTERGENIC
SBS	Chr2	4877358	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	12963518	A-G	Hetero	INTRON
SBS	Chr2	13793146	C-T	Hetero	INTERGENIC
SBS	Chr2	17061520	C-T	Hetero	INTERGENIC
SBS	Chr2	20676107	T-A	Hetero	INTERGENIC
SBS	Chr2	21216974	T-G	Hetero	INTERGENIC
SBS	Chr3	13901569	A-G	Homo	INTERGENIC
SBS	Chr4	7983302	A-G	Hetero	INTERGENIC
SBS	Chr5	4008917	G-A	Hetero	INTERGENIC
SBS	Chr5	4008918	G-A	Hetero	INTERGENIC
SBS	Chr5	8439261	G-A	Homo	INTERGENIC
SBS	Chr5	15825413	A-G	Homo	INTERGENIC
SBS	Chr5	18624140	A-T	Homo	INTERGENIC
SBS	Chr6	3891141	G-C	Hetero	UTR_5_PRIME
SBS	Chr6	5459117	C-T	Hetero	INTERGENIC
SBS	Chr6	5459118	A-T	Hetero	INTERGENIC
SBS	Chr6	9944139	C-T	Homo	INTERGENIC
SBS	Chr6	16756420	G-T	Hetero	INTERGENIC
SBS	Chr6	24347315	A-T	Homo	INTERGENIC
SBS	Chr7	2616240	A-G	Homo	INTERGENIC
SBS	Chr7	10537403	T-C	Hetero	INTERGENIC
SBS	Chr7	25447763	G-A	Hetero	INTERGENIC
SBS	Chr7	28829371	A-G	Hetero	INTERGENIC
SBS	Chr8	413127	C-T	Hetero	INTERGENIC
SBS	Chr8	11899533	G-A	Hetero	INTERGENIC
SBS	Chr8	11899552	G-T	Hetero	INTERGENIC
SBS	Chr9	3457533	C-T	Hetero	INTRON
SBS	Chr9	4877116	G-C	Hetero	INTERGENIC
SBS	Chr9	19816889	A-G	Homo	INTRON
SBS	Chr9	22272496	T-A	Homo	INTRON
SBS	Chr10	17345077	C-T	Hetero	INTERGENIC
SBS	Chr11	553584	G-C	Hetero	INTERGENIC
SBS	Chr11	11430298	A-T	Hetero	INTERGENIC
SBS	Chr11	15243897	C-A	Hetero	INTERGENIC
SBS	Chr11	19238772	C-G	Hetero	INTERGENIC
SBS	Chr11	25592665	T-C	Hetero	INTERGENIC
SBS	Chr12	4962295	T-G	Hetero	INTRON
SBS	Chr12	16240655	T-C	Homo	INTERGENIC
SBS	Chr12	25342292	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1732376	1732389	13
Deletion	Chr3	4791134	4791136	2
Deletion	Chr8	4864103	4864104	1
Deletion	Chr11	4895409	4895413	4
Deletion	Chr12	4918001	4956000	37999	4
Deletion	Chr12	8831590	8831592	2
Deletion	Chr10	10597481	10597492	11	OsKitaake10g062800
Deletion	Chr10	12431581	12431583	2
Deletion	Chr9	16734946	16734956	10
Deletion	Chr8	20236280	20236289	9	OsKitaake08g149050
Deletion	Chr4	20380041	20380043	2
Deletion	Chr12	20734708	20734710	2
Deletion	Chr2	21229561	21229562	1
Deletion	Chr2	22060001	22071000	10999	OsKitaake02g214600
Deletion	Chr9	22263359	22263360	1
Deletion	Chr1	24810632	24810633	1
Deletion	Chr4	32462878	32462880	2
Deletion	Chr1	33799208	33799213	5
Deletion	Chr1	38819716	38819718	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11384696	Chr5	27427680	OsKitaake05g248900
Translocation	Chr7	11384806	Chr5	27427754	OsKitaake05g248900
Translocation	Chr11	19636346	Chr2	34355201	2
Translocation	Chr11	19636364	Chr2	34356262	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes