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| Mutant Information |
|---|
| Mutant Name | FN892-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN892-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21852024 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 37567947 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 44019501 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g490800 |
| SBS | Chr2 | 3652926 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31230975 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 241507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1494880 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 10238430 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11107737 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 882850 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 14039932 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 24155355 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 8946458 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 14631359 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 26429810 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 8340520 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 28576925 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 1207217 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr8 | 1682879 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7484172 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7484173 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 11857568 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 17351368 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 95482 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5824077 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 2565636 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g037100 |
| SBS | Chr11 | 11621236 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15828759 | C-G | Hetero | INTRON | |
| SBS | Chr11 | 18173556 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18173559 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 18173560 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 6095769 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 13500416 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 25115444 | C-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3810967 | 3810979 | 12 | |
| Deletion | Chr1 | 6337278 | 6337280 | 2 | |
| Deletion | Chr10 | 12610295 | 12610309 | 14 | |
| Deletion | Chr2 | 14135164 | 14135166 | 2 | |
| Deletion | Chr11 | 17129434 | 17129436 | 2 | |
| Deletion | Chr12 | 18204627 | 18204633 | 6 | |
| Deletion | Chr5 | 20436571 | 20436573 | 2 | |
| Deletion | Chr7 | 21290259 | 21290261 | 2 | OsKitaake07g176500 |
| Deletion | Chr4 | 22629146 | 22629148 | 2 | |
| Deletion | Chr7 | 24764861 | 24764867 | 6 | |
| Deletion | Chr6 | 25290592 | 25290596 | 4 | |
| Deletion | Chr1 | 26826829 | 26826831 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 4429682 | 4429686 | 3 | |
| Insertion | Chr2 | 8493493 | 8493496 | 2 | |
| Insertion | Chr6 | 6770631 | 6770635 | 3 |