Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN893-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN893-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 261930 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 19088693 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 22621465 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 27916699 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 31275633 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 37277154 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6855621 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7408556 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14782294 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 15122722 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17532093 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34025725 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 1303952 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 1830989 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 8718434 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19894539 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g158100 |
| SBS | Chr7 | 9597196 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11784813 | A-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 5182677 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 12456100 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 14239390 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1360714 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 3943914 | T-A | Hetero | INTRON | |
| SBS | Chr9 | 20601748 | A-C | Homo | INTERGENIC | |
| SBS | Chr10 | 6891189 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4147182 | A-T | Homo | INTRON | |
| SBS | Chr11 | 7620411 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20407087 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 26690077 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 24162840 | C-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 11077905 | 11077907 | 2 | |
| Deletion | Chr8 | 11558494 | 11558496 | 2 | |
| Deletion | Chr7 | 12991964 | 12992031 | 67 | |
| Deletion | Chr12 | 13593001 | 13608000 | 14999 | OsKitaake12g112200 |
| Deletion | Chr6 | 14742001 | 14853000 | 110999 | 6 |
| Deletion | Chr6 | 14860001 | 14918000 | 57999 | 4 |
| Deletion | Chr6 | 19105001 | 19557000 | 451999 | 29 |
| Deletion | Chr8 | 19207147 | 19207152 | 5 | |
| Deletion | Chr3 | 26700037 | 26700041 | 4 | |
| Deletion | Chr1 | 31858287 | 31858296 | 9 | |
| Deletion | Chr3 | 36702769 | 36702772 | 3 | OsKitaake03g408600 |
| Deletion | Chr3 | 37209324 | 37209327 | 3 | OsKitaake03g416800 |
| Deletion | Chr1 | 38477739 | 38477742 | 3 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 25934016 | 25934019 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 7640713 | 7790056 | OsKitaake05g077700 |
| Inversion | Chr5 | 7640737 | 7790073 | OsKitaake05g077700 |
| Inversion | Chr2 | 8172194 | 8265051 | 2 |
| Inversion | Chr2 | 8172201 | 8265106 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 29191157 | Chr2 | 35727210 | |
| Translocation | Chr3 | 29192798 | Chr2 | 35727239 |