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| Mutant Information |
|---|
| Mutant Name | FN894-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN894-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8053579 | T-G | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 7462147 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 9857114 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 9857117 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26201894 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33644885 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36126618 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g399400 |
| SBS | Chr4 | 30353391 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 19899419 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 15436233 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 6609251 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 6609252 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12941412 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 12941414 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 26382849 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 28077400 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 24010008 | T-A | Homo | INTRON | |
| SBS | Chr9 | 8231573 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 6853986 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 7918592 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 13771381 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 16640637 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3595594 | A-T | Homo | INTRON | |
| SBS | Chr11 | 6685921 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 15205559 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2693435 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 2908158 | C-G | Hetero | INTRON |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 1289278 | 1289279 | 1 | OsKitaake11g015700 |
| Deletion | Chr5 | 5936869 | 5936871 | 2 | |
| Deletion | Chr8 | 6435582 | 6435586 | 4 | |
| Deletion | Chr6 | 18831624 | 18831637 | 13 | |
| Deletion | Chr11 | 22593105 | 22593108 | 3 | |
| Deletion | Chr3 | 27385749 | 27385755 | 6 | |
| Deletion | Chr11 | 27933090 | 27933096 | 6 | |
| Deletion | Chr11 | 28612803 | 28612804 | 1 | |
| Deletion | Chr1 | 33634037 | 33634038 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 10542206 | 10542209 | 2 | |
| Insertion | Chr5 | 10605087 | 10605092 | 4 | |
| Insertion | Chr7 | 8903867 | 8903869 | 1 | |
| Insertion | Chr7 | 9047214 | 9047219 | 4 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 28053530 | 28115284 | OsKitaake02g282900 |
| Inversion | Chr2 | 28055152 | 28120675 | OsKitaake02g282900 |
| Inversion | Chr3 | 37324010 | 37518513 | 2 |
| Inversion | Chr3 | 37324013 | 37518514 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 6166319 | Chr2 | 28053533 | OsKitaake02g282900 |
| Translocation | Chr9 | 6166325 | Chr2 | 28055147 | OsKitaake02g282900 |
| Translocation | Chr4 | 31346753 | Chr1 | 34533011 | 2 |
| Translocation | Chr4 | 31777150 | Chr1 | 34532991 | OsKitaake01g361800 |