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Mutant Information

Mutant Name	FN896-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN896-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7368017 A-T Homo INTERGENIC
SBS Chr1 11712844 G-T Homo INTERGENIC
SBS Chr2 10747936 G-A Hetero INTERGENIC
SBS Chr3 1657717 G-A Homo INTERGENIC
SBS Chr3 9975645 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g136400
SBS Chr3 11018300 A-G Homo INTRON
SBS Chr3 17203457 G-A Homo INTERGENIC
SBS Chr3 35620784 G-C Homo INTERGENIC
SBS Chr4 6417573 A-G Homo INTERGENIC
SBS Chr4 14019826 C-T Homo INTERGENIC
SBS Chr4 32149994 G-A Homo INTERGENIC
SBS Chr5 19907302 T-C Hetero INTERGENIC
SBS Chr5 19931230 C-T Hetero INTERGENIC
SBS Chr5 27480570 C-T Hetero INTERGENIC
SBS Chr6 26383615 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g236700
SBS Chr6 26766693 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g239406
SBS Chr7 9962630 A-G Hetero INTRON
SBS Chr7 10148156 T-A Hetero INTERGENIC
SBS Chr7 11653759 T-C Hetero INTERGENIC
SBS Chr7 28601128 G-A Hetero INTERGENIC
SBS Chr8 14309516 C-T Hetero INTERGENIC
SBS Chr8 20126228 A-T Hetero INTERGENIC
SBS Chr8 20126229 G-T Hetero INTERGENIC
SBS Chr9 2195828 G-T Homo INTERGENIC
SBS Chr9 2195830 A-T Homo INTERGENIC
SBS Chr9 7028962 T-C Hetero INTERGENIC
SBS Chr9 8590340 C-T Hetero INTERGENIC
SBS Chr9 10601853 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g066200
SBS Chr9 10960710 A-T Hetero SYNONYMOUS_CODING
SBS Chr9 10960711 A-T Hetero STOP_GAINED OsKitaake09g068100
SBS Chr9 14531120 A-T Hetero INTERGENIC
SBS Chr10 36988 C-T Homo INTERGENIC
SBS Chr11 21659266 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g171400

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 855223 855232 9
Deletion Chr10 2055582 2055589 7
Deletion Chr7 2504962 2504963 1
Deletion Chr7 2850971 2851292 321
Deletion Chr10 7872014 7872020 6
Deletion Chr9 7984270 7984271 1
Deletion Chr10 9682641 9682653 12
Deletion Chr9 11003819 11003823 4
Deletion Chr11 11588480 11588482 2
Deletion Chr11 13817748 13817750 2
Deletion Chr8 16395001 16805000 409999 21
Deletion Chr8 16811001 16866000 54999
Deletion Chr6 18429646 18429666 20
Deletion Chr6 25383315 25383318 3
Deletion Chr3 33120665 33120666 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5142394 5142398 3
Insertion Chr2 4605218 4605222 3
Insertion Chr5 745553 745556 2
Insertion Chr5 21931272 21931277 4
Insertion Chr6 6461676 6461679 2
Insertion Chr7 28907917 28907920 2
Insertion Chr10 68647 68652 4
Insertion Chr10 23539482 23539487 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18635766 19152790
Inversion Chr3 18635769 19152799
Inversion Chr5 27224188 27286648
Inversion Chr5 27224192 27286654

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7368017	A-T	Homo	INTERGENIC
SBS	Chr1	11712844	G-T	Homo	INTERGENIC
SBS	Chr2	10747936	G-A	Hetero	INTERGENIC
SBS	Chr3	1657717	G-A	Homo	INTERGENIC
SBS	Chr3	9975645	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g136400
SBS	Chr3	11018300	A-G	Homo	INTRON
SBS	Chr3	17203457	G-A	Homo	INTERGENIC
SBS	Chr3	35620784	G-C	Homo	INTERGENIC
SBS	Chr4	6417573	A-G	Homo	INTERGENIC
SBS	Chr4	14019826	C-T	Homo	INTERGENIC
SBS	Chr4	32149994	G-A	Homo	INTERGENIC
SBS	Chr5	19907302	T-C	Hetero	INTERGENIC
SBS	Chr5	19931230	C-T	Hetero	INTERGENIC
SBS	Chr5	27480570	C-T	Hetero	INTERGENIC
SBS	Chr6	26383615	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g236700
SBS	Chr6	26766693	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g239406
SBS	Chr7	9962630	A-G	Hetero	INTRON
SBS	Chr7	10148156	T-A	Hetero	INTERGENIC
SBS	Chr7	11653759	T-C	Hetero	INTERGENIC
SBS	Chr7	28601128	G-A	Hetero	INTERGENIC
SBS	Chr8	14309516	C-T	Hetero	INTERGENIC
SBS	Chr8	20126228	A-T	Hetero	INTERGENIC
SBS	Chr8	20126229	G-T	Hetero	INTERGENIC
SBS	Chr9	2195828	G-T	Homo	INTERGENIC
SBS	Chr9	2195830	A-T	Homo	INTERGENIC
SBS	Chr9	7028962	T-C	Hetero	INTERGENIC
SBS	Chr9	8590340	C-T	Hetero	INTERGENIC
SBS	Chr9	10601853	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g066200
SBS	Chr9	10960710	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr9	10960711	A-T	Hetero	STOP_GAINED	OsKitaake09g068100
SBS	Chr9	14531120	A-T	Hetero	INTERGENIC
SBS	Chr10	36988	C-T	Homo	INTERGENIC
SBS	Chr11	21659266	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g171400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	855223	855232	9
Deletion	Chr10	2055582	2055589	7
Deletion	Chr7	2504962	2504963	1
Deletion	Chr7	2850971	2851292	321
Deletion	Chr10	7872014	7872020	6
Deletion	Chr9	7984270	7984271	1
Deletion	Chr10	9682641	9682653	12
Deletion	Chr9	11003819	11003823	4
Deletion	Chr11	11588480	11588482	2
Deletion	Chr11	13817748	13817750	2
Deletion	Chr8	16395001	16805000	409999	21
Deletion	Chr8	16811001	16866000	54999
Deletion	Chr6	18429646	18429666	20
Deletion	Chr6	25383315	25383318	3
Deletion	Chr3	33120665	33120666	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18635766	19152790
Inversion	Chr3	18635769	19152799
Inversion	Chr5	27224188	27286648
Inversion	Chr5	27224192	27286654

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes