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Mutant Information

Mutant Name	FN897-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN897-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1413744	C-A	Homo	INTERGENIC
SBS	Chr1	22193329	G-A	Homo	INTERGENIC
SBS	Chr2	7555031	C-T	Hetero	INTERGENIC
SBS	Chr2	16564705	G-A	Hetero	INTERGENIC
SBS	Chr2	25032036	C-T	Hetero	INTERGENIC
SBS	Chr3	11114382	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	15284687	G-T	Hetero	INTERGENIC
SBS	Chr3	16352018	C-G	Hetero	INTERGENIC
SBS	Chr3	21704309	T-A	Hetero	INTERGENIC
SBS	Chr3	22216579	C-A	Hetero	INTERGENIC
SBS	Chr3	32870472	T-C	Hetero	INTERGENIC
SBS	Chr3	34757002	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	35389168	T-C	Hetero	INTERGENIC
SBS	Chr4	9146	G-A	Hetero	INTERGENIC
SBS	Chr4	5111169	G-A	Hetero	INTERGENIC
SBS	Chr4	8657876	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g044100
SBS	Chr4	28616531	G-A	Homo	INTERGENIC
SBS	Chr4	30576192	A-T	Hetero	INTERGENIC
SBS	Chr5	8230075	G-T	Hetero	INTERGENIC
SBS	Chr5	22466799	A-G	Hetero	INTERGENIC
SBS	Chr6	25421588	G-C	Hetero	INTERGENIC
SBS	Chr7	8501126	C-G	Hetero	INTERGENIC
SBS	Chr7	26072254	T-G	Hetero	INTERGENIC
SBS	Chr7	27187131	T-G	Homo	INTERGENIC
SBS	Chr8	1846963	C-A	Homo	INTERGENIC
SBS	Chr8	18218509	C-T	Hetero	INTRON
SBS	Chr8	20947818	T-G	Homo	INTERGENIC
SBS	Chr9	9580162	A-T	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Hetero	INTERGENIC
SBS	Chr9	19754773	G-A	Hetero	START_GAINED
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	4007097	C-T	Hetero	INTERGENIC
SBS	Chr10	4480158	G-A	Hetero	INTERGENIC
SBS	Chr10	4790983	A-G	Hetero	INTERGENIC
SBS	Chr10	7890887	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g049900
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	21862013	C-A	Homo	INTERGENIC
SBS	Chr12	21654906	G-T	Homo	INTERGENIC
SBS	Chr12	21854073	A-G	Homo	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1731518	1731526	8
Deletion	Chr8	1765457	1765458	1
Deletion	Chr8	2434318	2434321	3	OsKitaake08g029100
Deletion	Chr8	3431328	3431341	13
Deletion	Chr1	5331001	5353000	21999	7
Deletion	Chr2	6318901	6318908	7
Deletion	Chr9	9603696	9603704	8
Deletion	Chr4	15301246	15301251	5
Deletion	Chr9	16599488	16599489	1
Deletion	Chr4	17239288	17239293	5
Deletion	Chr9	17996001	18004000	7999
Deletion	Chr8	19883422	19883423	1
Deletion	Chr3	20502373	20502380	7
Deletion	Chr12	21388380	21388383	3
Deletion	Chr1	21947121	21947127	6
Deletion	Chr12	22125892	22125894	2
Deletion	Chr1	24503596	24503599	3
Deletion	Chr12	25688625	25688626	1	OsKitaake12g211900
Deletion	Chr3	25941349	25941350	1
Deletion	Chr3	26640921	26640985	64
Deletion	Chr6	26884668	26884672	4
Deletion	Chr3	34730039	34730050	11

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	34141261	34141263	1
Insertion	Chr2	14475430	14475433	2
Insertion	Chr3	22163107	22163121	13
Insertion	Chr3	34252477	34252480	2
Insertion	Chr4	29716800	29716804	3
Insertion	Chr7	7278779	7278782	2
Insertion	Chr11	6789229	6789232	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9063485	9255204	OsKitaake09g055300
Inversion	Chr5	16223192	17129770

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	607300	Chr3	11103756	OsKitaake05g006500
Translocation	Chr5	607301	Chr3	11114027	2
Translocation	Chr10	2229123	Chr1	5334093	OsKitaake01g069100
Translocation	Chr10	2233438	Chr1	5353169	OsKitaake01g069400
Translocation	Chr10	8658490	Chr1	17293321	OsKitaake10g053166
Translocation	Chr10	13129763	Chr4	9662354
Translocation	Chr5	17129765	Chr1	5334088	OsKitaake01g069100
Translocation	Chr9	18004608	Chr7	26964942	OsKitaake07g251500
Translocation	Chr9	18005480	Chr7	26964941	2
Translocation	Chr7	28603243	Chr3	3478964
Translocation	Chr7	28603428	Chr3	3478964