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Mutant Information

Mutant Name	FN898-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN898-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5337054 C-T Homo UTR_3_PRIME
SBS Chr1 7896584 C-T Hetero INTERGENIC
SBS Chr1 12464304 A-G Homo INTERGENIC
SBS Chr1 12642137 G-A Hetero INTERGENIC
SBS Chr1 14617160 C-T Hetero INTRON
SBS Chr1 33544167 C-T Homo INTERGENIC
SBS Chr2 7075652 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g095000
SBS Chr2 14986573 C-T Hetero INTERGENIC
SBS Chr2 15454290 C-G Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 24354175 A-G Hetero UTR_3_PRIME
SBS Chr2 24630094 T-A Hetero SYNONYMOUS_CODING
SBS Chr2 26895667 A-C Hetero INTERGENIC
SBS Chr2 33041699 A-G Hetero INTERGENIC
SBS Chr3 910143 C-G Hetero INTERGENIC
SBS Chr3 7135284 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g099500
SBS Chr3 11348156 G-A Hetero INTERGENIC
SBS Chr3 25534478 C-T Homo UTR_3_PRIME
SBS Chr3 36299521 A-T Hetero INTERGENIC
SBS Chr5 829280 A-T Hetero INTERGENIC
SBS Chr5 11901263 C-T Hetero INTERGENIC
SBS Chr5 14889052 C-T Hetero INTERGENIC
SBS Chr5 22897526 T-A Hetero UTR_3_PRIME
SBS Chr5 28259266 C-A Hetero INTERGENIC
SBS Chr6 19607091 G-A Hetero INTERGENIC
SBS Chr6 26309731 G-A Hetero INTERGENIC
SBS Chr7 5976049 C-G Hetero INTERGENIC
SBS Chr7 6861089 T-C Hetero INTERGENIC
SBS Chr7 11439964 G-A Hetero INTERGENIC
SBS Chr7 19429163 A-C Hetero INTRON
SBS Chr8 17161279 T-G Homo INTERGENIC
SBS Chr8 20916413 G-C Homo INTERGENIC
SBS Chr8 23282204 G-A Homo INTERGENIC
SBS Chr9 10115151 A-G Hetero INTERGENIC
SBS Chr10 6335123 G-C Hetero INTERGENIC
SBS Chr10 10187133 T-G Homo INTERGENIC
SBS Chr10 14312675 G-A Hetero INTERGENIC
SBS Chr10 16593227 T-C Hetero INTRON
SBS Chr10 21521002 T-G Hetero INTRON
SBS Chr11 1662316 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g022200
SBS Chr11 3816471 T-G Hetero INTERGENIC
SBS Chr11 4111083 G-A Hetero INTERGENIC
SBS Chr11 22979743 T-A Homo INTERGENIC
SBS Chr11 22979744 C-A Homo INTERGENIC
SBS Chr12 9372770 G-A Hetero INTERGENIC
SBS Chr12 10116698 A-G Hetero INTRON
SBS Chr12 13637294 A-C Hetero INTERGENIC
SBS Chr12 14080273 A-G Hetero INTERGENIC
SBS Chr12 14204686 A-G Hetero INTERGENIC
SBS Chr12 16812171 G-A Hetero INTERGENIC
SBS Chr12 22379979 C-G Hetero INTERGENIC

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 761192 761193 1
Deletion Chr1 1696703 1696705 2
Deletion Chr11 1918539 1918549 10
Deletion Chr9 2711470 2711492 22
Deletion Chr5 6252695 6252702 7
Deletion Chr3 7103636 7103637 1
Deletion Chr10 7360493 7360494 1
Deletion Chr2 8402309 8402329 20
Deletion Chr5 8693830 8693841 11
Deletion Chr7 9605200 9605201 1
Deletion Chr2 9730134 9730140 6
Deletion Chr2 9883001 9904000 20999
Deletion Chr9 10380228 10380230 2
Deletion Chr4 11042888 11042907 19
Deletion Chr1 12140177 12140178 1
Deletion Chr10 13778023 13778034 11
Deletion Chr5 16729041 16729043 2
Deletion Chr3 18500236 18500240 4 OsKitaake03g224200
Deletion Chr7 19215610 19215627 17
Deletion Chr3 22559001 22571000 11999 2
Deletion Chr9 22729411 22729412 1
Deletion Chr1 23233852 23233857 5
Deletion Chr3 23264001 23511000 246999 28
Deletion Chr2 23312781 23312809 28
Deletion Chr1 24366419 24366420 1 OsKitaake01g234600
Deletion Chr2 24724210 24724213 3
Deletion Chr2 25275838 25275841 3 OsKitaake02g248900
Deletion Chr3 26898319 26898321 2
Deletion Chr1 31503461 31503463 2

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10343054 10343057 2
Insertion Chr1 38597109 38597121 11
Insertion Chr3 10351141 10351144 2
Insertion Chr3 27223694 27223697 2
Insertion Chr4 24044676 24044678 1
Insertion Chr9 12736075 12736078 2
Insertion Chr9 14214674 14214677 2
Insertion Chr10 2779011 2779013 1
Insertion Chr12 7334223 7334226 2
Insertion Chr3 20053098 20053100 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 9882980 10215210
Inversion Chr2 9902384 10215210
Inversion Chr3 22558579 22620233
Inversion Chr3 22620237 23510513
Inversion Chr3 22620629 23260198 OsKitaake03g245350
Inversion Chr3 22620643 23618779 OsKitaake03g245350

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10109069 Chr2 32615841
Translocation Chr12 10110497 Chr2 32615838
Translocation Chr8 25846067 Chr6 13036934

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5337054	C-T	Homo	UTR_3_PRIME
SBS	Chr1	7896584	C-T	Hetero	INTERGENIC
SBS	Chr1	12464304	A-G	Homo	INTERGENIC
SBS	Chr1	12642137	G-A	Hetero	INTERGENIC
SBS	Chr1	14617160	C-T	Hetero	INTRON
SBS	Chr1	33544167	C-T	Homo	INTERGENIC
SBS	Chr2	7075652	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g095000
SBS	Chr2	14986573	C-T	Hetero	INTERGENIC
SBS	Chr2	15454290	C-G	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	24354175	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	24630094	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	26895667	A-C	Hetero	INTERGENIC
SBS	Chr2	33041699	A-G	Hetero	INTERGENIC
SBS	Chr3	910143	C-G	Hetero	INTERGENIC
SBS	Chr3	7135284	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g099500
SBS	Chr3	11348156	G-A	Hetero	INTERGENIC
SBS	Chr3	25534478	C-T	Homo	UTR_3_PRIME
SBS	Chr3	36299521	A-T	Hetero	INTERGENIC
SBS	Chr5	829280	A-T	Hetero	INTERGENIC
SBS	Chr5	11901263	C-T	Hetero	INTERGENIC
SBS	Chr5	14889052	C-T	Hetero	INTERGENIC
SBS	Chr5	22897526	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	28259266	C-A	Hetero	INTERGENIC
SBS	Chr6	19607091	G-A	Hetero	INTERGENIC
SBS	Chr6	26309731	G-A	Hetero	INTERGENIC
SBS	Chr7	5976049	C-G	Hetero	INTERGENIC
SBS	Chr7	6861089	T-C	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Hetero	INTERGENIC
SBS	Chr7	19429163	A-C	Hetero	INTRON
SBS	Chr8	17161279	T-G	Homo	INTERGENIC
SBS	Chr8	20916413	G-C	Homo	INTERGENIC
SBS	Chr8	23282204	G-A	Homo	INTERGENIC
SBS	Chr9	10115151	A-G	Hetero	INTERGENIC
SBS	Chr10	6335123	G-C	Hetero	INTERGENIC
SBS	Chr10	10187133	T-G	Homo	INTERGENIC
SBS	Chr10	14312675	G-A	Hetero	INTERGENIC
SBS	Chr10	16593227	T-C	Hetero	INTRON
SBS	Chr10	21521002	T-G	Hetero	INTRON
SBS	Chr11	1662316	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g022200
SBS	Chr11	3816471	T-G	Hetero	INTERGENIC
SBS	Chr11	4111083	G-A	Hetero	INTERGENIC
SBS	Chr11	22979743	T-A	Homo	INTERGENIC
SBS	Chr11	22979744	C-A	Homo	INTERGENIC
SBS	Chr12	9372770	G-A	Hetero	INTERGENIC
SBS	Chr12	10116698	A-G	Hetero	INTRON
SBS	Chr12	13637294	A-C	Hetero	INTERGENIC
SBS	Chr12	14080273	A-G	Hetero	INTERGENIC
SBS	Chr12	14204686	A-G	Hetero	INTERGENIC
SBS	Chr12	16812171	G-A	Hetero	INTERGENIC
SBS	Chr12	22379979	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	761192	761193	1
Deletion	Chr1	1696703	1696705	2
Deletion	Chr11	1918539	1918549	10
Deletion	Chr9	2711470	2711492	22
Deletion	Chr5	6252695	6252702	7
Deletion	Chr3	7103636	7103637	1
Deletion	Chr10	7360493	7360494	1
Deletion	Chr2	8402309	8402329	20
Deletion	Chr5	8693830	8693841	11
Deletion	Chr7	9605200	9605201	1
Deletion	Chr2	9730134	9730140	6
Deletion	Chr2	9883001	9904000	20999
Deletion	Chr9	10380228	10380230	2
Deletion	Chr4	11042888	11042907	19
Deletion	Chr1	12140177	12140178	1
Deletion	Chr10	13778023	13778034	11
Deletion	Chr5	16729041	16729043	2
Deletion	Chr3	18500236	18500240	4	OsKitaake03g224200
Deletion	Chr7	19215610	19215627	17
Deletion	Chr3	22559001	22571000	11999	2
Deletion	Chr9	22729411	22729412	1
Deletion	Chr1	23233852	23233857	5
Deletion	Chr3	23264001	23511000	246999	28
Deletion	Chr2	23312781	23312809	28
Deletion	Chr1	24366419	24366420	1	OsKitaake01g234600
Deletion	Chr2	24724210	24724213	3
Deletion	Chr2	25275838	25275841	3	OsKitaake02g248900
Deletion	Chr3	26898319	26898321	2
Deletion	Chr1	31503461	31503463	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	9882980	10215210
Inversion	Chr2	9902384	10215210
Inversion	Chr3	22558579	22620233
Inversion	Chr3	22620237	23510513
Inversion	Chr3	22620629	23260198	OsKitaake03g245350
Inversion	Chr3	22620643	23618779	OsKitaake03g245350

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes