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Mutant Information

Mutant Name	FN899-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN899-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13678638 G-A Homo INTERGENIC
SBS Chr1 34509887 G-A Hetero INTERGENIC
SBS Chr2 11777408 C-T Hetero UTR_5_PRIME
SBS Chr2 14632473 C-G Hetero UTR_3_PRIME
SBS Chr2 20947226 C-A Hetero INTERGENIC
SBS Chr2 20947227 T-A Hetero INTERGENIC
SBS Chr2 27110222 C-T Homo INTERGENIC
SBS Chr3 5608078 A-G Hetero INTRON
SBS Chr3 12335494 A-T Homo INTERGENIC
SBS Chr3 21958107 T-C Homo INTERGENIC
SBS Chr4 6909307 C-T Hetero INTERGENIC
SBS Chr4 11479808 C-A Hetero INTERGENIC
SBS Chr4 22998501 T-C Homo INTERGENIC
SBS Chr4 24180236 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g155300
SBS Chr5 20946785 T-C Homo INTERGENIC
SBS Chr5 21594020 C-A Homo INTERGENIC
SBS Chr6 4345387 G-A Homo INTERGENIC
SBS Chr7 13389671 C-G Hetero INTERGENIC
SBS Chr7 18106203 G-A Homo INTRON
SBS Chr8 5026225 G-A Hetero INTRON
SBS Chr8 5026226 G-A Hetero INTRON
SBS Chr8 18032670 A-T Hetero INTERGENIC
SBS Chr8 25438785 C-T Homo INTRON
SBS Chr9 9289199 C-T Hetero INTERGENIC
SBS Chr9 10502136 T-A Hetero SYNONYMOUS_CODING
SBS Chr10 2773029 G-A Homo INTERGENIC
SBS Chr10 12459774 G-C Hetero INTERGENIC
SBS Chr10 12459775 A-G Hetero INTERGENIC
SBS Chr10 13145000 C-T Hetero INTERGENIC
SBS Chr10 18036442 T-C Hetero INTERGENIC
SBS Chr11 1114295 A-T Hetero UTR_3_PRIME
SBS Chr11 7846016 T-A Hetero INTERGENIC
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 18473561 T-G Hetero INTERGENIC
SBS Chr11 26528678 G-A Hetero INTERGENIC
SBS Chr12 10084720 G-C Hetero INTERGENIC
SBS Chr12 26678888 T-C Hetero INTERGENIC

Deletions: 33

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 4449206 4449208 2
Deletion Chr7 4463235 4463237 2
Deletion Chr5 5893760 5893848 88
Deletion Chr5 7115325 7115327 2
Deletion Chr12 8874001 8975000 100999 5
Deletion Chr12 9754940 9754941 1
Deletion Chr9 9811511 9811516 5
Deletion Chr3 11670512 11670520 8
Deletion Chr5 12378153 12378165 12
Deletion Chr10 12461386 12461388 2
Deletion Chr9 12985949 12985951 2
Deletion Chr10 14051424 14051425 1
Deletion Chr4 14799798 14799799 1
Deletion Chr7 15020527 15020529 2
Deletion Chr4 16833470 16833478 8
Deletion Chr6 18149150 18149152 2
Deletion Chr6 19016433 19016446 13
Deletion Chr2 20601652 20601673 21
Deletion Chr2 21822439 21822462 23 OsKitaake02g211700
Deletion Chr3 23676352 23676354 2
Deletion Chr11 24441590 24441591 1
Deletion Chr11 25238319 25238321 2
Deletion Chr8 26413880 26414025 145
Deletion Chr2 26642001 26695000 52999 7
Deletion Chr1 27960414 27960514 100
Deletion Chr5 28209932 28209940 8
Deletion Chr7 28356019 28356028 9
Deletion Chr1 31380454 31380456 2
Deletion Chr1 32200240 32200244 4
Deletion Chr4 34457578 34457583 5
Deletion Chr1 34837502 34837505 3
Deletion Chr2 36662462 36662466 4
Deletion Chr1 40107348 40107354 6 OsKitaake01g435050

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40532503 40532506 2
Insertion Chr4 19348015 19348018 2
Insertion Chr11 25036464 25036472 7
Insertion Chr12 23403553 23403555 1
Insertion Chr4 2728023 2728026 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3717900 4473529
Inversion Chr5 3734877 4473525 OsKitaake05g044700
Inversion Chr2 16221918 16236648
Inversion Chr2 16223045 16236650 OsKitaake02g166900
Inversion Chr10 20929252 21009933
Inversion Chr10 20929256 21009935

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 5905039 Chr2 16221916
Translocation Chr7 16312089 Chr1 41355657

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13678638	G-A	Homo	INTERGENIC
SBS	Chr1	34509887	G-A	Hetero	INTERGENIC
SBS	Chr2	11777408	C-T	Hetero	UTR_5_PRIME
SBS	Chr2	14632473	C-G	Hetero	UTR_3_PRIME
SBS	Chr2	20947226	C-A	Hetero	INTERGENIC
SBS	Chr2	20947227	T-A	Hetero	INTERGENIC
SBS	Chr2	27110222	C-T	Homo	INTERGENIC
SBS	Chr3	5608078	A-G	Hetero	INTRON
SBS	Chr3	12335494	A-T	Homo	INTERGENIC
SBS	Chr3	21958107	T-C	Homo	INTERGENIC
SBS	Chr4	6909307	C-T	Hetero	INTERGENIC
SBS	Chr4	11479808	C-A	Hetero	INTERGENIC
SBS	Chr4	22998501	T-C	Homo	INTERGENIC
SBS	Chr4	24180236	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g155300
SBS	Chr5	20946785	T-C	Homo	INTERGENIC
SBS	Chr5	21594020	C-A	Homo	INTERGENIC
SBS	Chr6	4345387	G-A	Homo	INTERGENIC
SBS	Chr7	13389671	C-G	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Homo	INTRON
SBS	Chr8	5026225	G-A	Hetero	INTRON
SBS	Chr8	5026226	G-A	Hetero	INTRON
SBS	Chr8	18032670	A-T	Hetero	INTERGENIC
SBS	Chr8	25438785	C-T	Homo	INTRON
SBS	Chr9	9289199	C-T	Hetero	INTERGENIC
SBS	Chr9	10502136	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	2773029	G-A	Homo	INTERGENIC
SBS	Chr10	12459774	G-C	Hetero	INTERGENIC
SBS	Chr10	12459775	A-G	Hetero	INTERGENIC
SBS	Chr10	13145000	C-T	Hetero	INTERGENIC
SBS	Chr10	18036442	T-C	Hetero	INTERGENIC
SBS	Chr11	1114295	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	7846016	T-A	Hetero	INTERGENIC
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	18473561	T-G	Hetero	INTERGENIC
SBS	Chr11	26528678	G-A	Hetero	INTERGENIC
SBS	Chr12	10084720	G-C	Hetero	INTERGENIC
SBS	Chr12	26678888	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	4449206	4449208	2
Deletion	Chr7	4463235	4463237	2
Deletion	Chr5	5893760	5893848	88
Deletion	Chr5	7115325	7115327	2
Deletion	Chr12	8874001	8975000	100999	5
Deletion	Chr12	9754940	9754941	1
Deletion	Chr9	9811511	9811516	5
Deletion	Chr3	11670512	11670520	8
Deletion	Chr5	12378153	12378165	12
Deletion	Chr10	12461386	12461388	2
Deletion	Chr9	12985949	12985951	2
Deletion	Chr10	14051424	14051425	1
Deletion	Chr4	14799798	14799799	1
Deletion	Chr7	15020527	15020529	2
Deletion	Chr4	16833470	16833478	8
Deletion	Chr6	18149150	18149152	2
Deletion	Chr6	19016433	19016446	13
Deletion	Chr2	20601652	20601673	21
Deletion	Chr2	21822439	21822462	23	OsKitaake02g211700
Deletion	Chr3	23676352	23676354	2
Deletion	Chr11	24441590	24441591	1
Deletion	Chr11	25238319	25238321	2
Deletion	Chr8	26413880	26414025	145
Deletion	Chr2	26642001	26695000	52999	7
Deletion	Chr1	27960414	27960514	100
Deletion	Chr5	28209932	28209940	8
Deletion	Chr7	28356019	28356028	9
Deletion	Chr1	31380454	31380456	2
Deletion	Chr1	32200240	32200244	4
Deletion	Chr4	34457578	34457583	5
Deletion	Chr1	34837502	34837505	3
Deletion	Chr2	36662462	36662466	4
Deletion	Chr1	40107348	40107354	6	OsKitaake01g435050

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3717900	4473529
Inversion	Chr5	3734877	4473525	OsKitaake05g044700
Inversion	Chr2	16221918	16236648
Inversion	Chr2	16223045	16236650	OsKitaake02g166900
Inversion	Chr10	20929252	21009933
Inversion	Chr10	20929256	21009935

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes