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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN901-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN901-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6807595 T-A Hetero INTERGENIC
SBS Chr1 6807596 G-A Hetero INTERGENIC
SBS Chr1 8928630 G-T Hetero UTR_3_PRIME
SBS Chr1 12656278 T-C Hetero INTERGENIC
SBS Chr1 24452558 T-A Homo INTERGENIC
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr1 31837525 C-G Hetero INTERGENIC
SBS Chr1 41581335 C-T Hetero INTERGENIC
SBS Chr3 13544195 A-G Hetero INTERGENIC
SBS Chr3 19105757 G-C Hetero INTERGENIC
SBS Chr3 30084677 A-G Homo INTERGENIC
SBS Chr3 33069402 A-G Hetero INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 29994049 G-A Hetero INTERGENIC
SBS Chr4 33903635 A-G Hetero INTERGENIC
SBS Chr5 2371706 A-G Hetero START_GAINED
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 5742263 G-C Hetero INTRON
SBS Chr5 8727464 T-C Homo INTERGENIC
SBS Chr5 10305852 G-A Homo INTERGENIC
SBS Chr5 22143288 A-G Hetero INTERGENIC
SBS Chr5 28604660 A-C Hetero INTRON
SBS Chr6 21366003 A-C Hetero INTERGENIC
SBS Chr6 26472843 C-T Homo INTERGENIC
SBS Chr6 26609125 G-T Homo INTERGENIC
SBS Chr7 9037243 C-T Hetero INTERGENIC
SBS Chr7 16634853 C-T Hetero INTERGENIC
SBS Chr8 2735146 T-G Homo INTERGENIC
SBS Chr8 8425340 C-T Hetero INTERGENIC
SBS Chr9 4233331 T-C Hetero INTERGENIC
SBS Chr9 10658830 C-G Hetero INTERGENIC
SBS Chr9 11711325 C-T Hetero INTERGENIC
SBS Chr9 13912804 C-T Hetero INTERGENIC
SBS Chr9 16894063 C-A Hetero INTERGENIC
SBS Chr9 21954346 T-A Hetero INTERGENIC
SBS Chr10 1767612 T-C Homo UTR_3_PRIME
SBS Chr10 10119065 C-T Hetero INTERGENIC
SBS Chr11 917029 G-C Hetero INTERGENIC
SBS Chr11 16375615 G-A Hetero INTRON
SBS Chr12 19300272 T-C Homo INTRON
SBS Chr12 19959629 T-C Hetero INTERGENIC

Deletions: 37

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 167483 167486 3
Deletion Chr10 284847 284851 4
Deletion Chr6 506823 506838 15
Deletion Chr10 1091310 1091320 10
Deletion Chr12 1351303 1351311 8
Deletion Chr10 1863737 1863738 1
Deletion Chr10 2287017 2287026 9
Deletion Chr10 3480324 3480340 16
Deletion Chr8 4980708 4980722 14
Deletion Chr2 6240817 6240818 1
Deletion Chr3 7015023 7015024 1
Deletion Chr5 7125497 7125504 7
Deletion Chr8 7725848 7725849 1
Deletion Chr3 8782687 8782697 10
Deletion Chr2 8877314 8877315 1
Deletion Chr4 9261763 9261765 2
Deletion Chr3 15801316 15801318 2
Deletion Chr4 16157677 16157690 13
Deletion Chr5 18637660 18637661 1
Deletion Chr5 18651001 18747000 95999 3
Deletion Chr2 19697001 19705000 7999 2
Deletion Chr5 19905754 19905758 4
Deletion Chr3 20460492 20460500 8
Deletion Chr2 20514754 20514764 10
Deletion Chr3 20626262 20626267 5
Deletion Chr7 21077429 21077435 6
Deletion Chr1 21528779 21528781 2
Deletion Chr5 23260702 23260716 14 OsKitaake05g194400
Deletion Chr6 26628001 26636000 7999
Deletion Chr1 27029632 27029634 2
Deletion Chr6 27201653 27201663 10
Deletion Chr4 27581481 27581486 5
Deletion Chr2 27959983 27959990 7
Deletion Chr8 28506548 28506550 2
Deletion Chr6 29669855 29669868 13
Deletion Chr2 32022632 32022637 5
Deletion Chr1 40917323 40917330 7 OsKitaake01g446200

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19122371 19122374 2
Insertion Chr10 7279544 7279547 2
Insertion Chr12 19828679 19828682 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 26636428 26896986 OsKitaake06g240800

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3752451 Chr3 35160229
Translocation Chr12 3753918 Chr3 35160239
Translocation Chr12 3753922 Chr5 18745815
Translocation Chr12 3757869 Chr6 26627639
Translocation Chr12 3759971 Chr6 26896990 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6807595	T-A	Hetero	INTERGENIC
SBS	Chr1	6807596	G-A	Hetero	INTERGENIC
SBS	Chr1	8928630	G-T	Hetero	UTR_3_PRIME
SBS	Chr1	12656278	T-C	Hetero	INTERGENIC
SBS	Chr1	24452558	T-A	Homo	INTERGENIC
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr1	31837525	C-G	Hetero	INTERGENIC
SBS	Chr1	41581335	C-T	Hetero	INTERGENIC
SBS	Chr3	13544195	A-G	Hetero	INTERGENIC
SBS	Chr3	19105757	G-C	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Homo	INTERGENIC
SBS	Chr3	33069402	A-G	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	29994049	G-A	Hetero	INTERGENIC
SBS	Chr4	33903635	A-G	Hetero	INTERGENIC
SBS	Chr5	2371706	A-G	Hetero	START_GAINED
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	5742263	G-C	Hetero	INTRON
SBS	Chr5	8727464	T-C	Homo	INTERGENIC
SBS	Chr5	10305852	G-A	Homo	INTERGENIC
SBS	Chr5	22143288	A-G	Hetero	INTERGENIC
SBS	Chr5	28604660	A-C	Hetero	INTRON
SBS	Chr6	21366003	A-C	Hetero	INTERGENIC
SBS	Chr6	26472843	C-T	Homo	INTERGENIC
SBS	Chr6	26609125	G-T	Homo	INTERGENIC
SBS	Chr7	9037243	C-T	Hetero	INTERGENIC
SBS	Chr7	16634853	C-T	Hetero	INTERGENIC
SBS	Chr8	2735146	T-G	Homo	INTERGENIC
SBS	Chr8	8425340	C-T	Hetero	INTERGENIC
SBS	Chr9	4233331	T-C	Hetero	INTERGENIC
SBS	Chr9	10658830	C-G	Hetero	INTERGENIC
SBS	Chr9	11711325	C-T	Hetero	INTERGENIC
SBS	Chr9	13912804	C-T	Hetero	INTERGENIC
SBS	Chr9	16894063	C-A	Hetero	INTERGENIC
SBS	Chr9	21954346	T-A	Hetero	INTERGENIC
SBS	Chr10	1767612	T-C	Homo	UTR_3_PRIME
SBS	Chr10	10119065	C-T	Hetero	INTERGENIC
SBS	Chr11	917029	G-C	Hetero	INTERGENIC
SBS	Chr11	16375615	G-A	Hetero	INTRON
SBS	Chr12	19300272	T-C	Homo	INTRON
SBS	Chr12	19959629	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	167483	167486	3
Deletion	Chr10	284847	284851	4
Deletion	Chr6	506823	506838	15
Deletion	Chr10	1091310	1091320	10
Deletion	Chr12	1351303	1351311	8
Deletion	Chr10	1863737	1863738	1
Deletion	Chr10	2287017	2287026	9
Deletion	Chr10	3480324	3480340	16
Deletion	Chr8	4980708	4980722	14
Deletion	Chr2	6240817	6240818	1
Deletion	Chr3	7015023	7015024	1
Deletion	Chr5	7125497	7125504	7
Deletion	Chr8	7725848	7725849	1
Deletion	Chr3	8782687	8782697	10
Deletion	Chr2	8877314	8877315	1
Deletion	Chr4	9261763	9261765	2
Deletion	Chr3	15801316	15801318	2
Deletion	Chr4	16157677	16157690	13
Deletion	Chr5	18637660	18637661	1
Deletion	Chr5	18651001	18747000	95999	3
Deletion	Chr2	19697001	19705000	7999	2
Deletion	Chr5	19905754	19905758	4
Deletion	Chr3	20460492	20460500	8
Deletion	Chr2	20514754	20514764	10
Deletion	Chr3	20626262	20626267	5
Deletion	Chr7	21077429	21077435	6
Deletion	Chr1	21528779	21528781	2
Deletion	Chr5	23260702	23260716	14	OsKitaake05g194400
Deletion	Chr6	26628001	26636000	7999
Deletion	Chr1	27029632	27029634	2
Deletion	Chr6	27201653	27201663	10
Deletion	Chr4	27581481	27581486	5
Deletion	Chr2	27959983	27959990	7
Deletion	Chr8	28506548	28506550	2
Deletion	Chr6	29669855	29669868	13
Deletion	Chr2	32022632	32022637	5
Deletion	Chr1	40917323	40917330	7	OsKitaake01g446200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	26636428	26896986	OsKitaake06g240800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes