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Mutant Information

Mutant Name	FN902-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN902-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25730800 C-T Homo INTERGENIC
SBS Chr1 27778243 C-T Hetero INTERGENIC
SBS Chr2 4048942 A-G Homo UTR_3_PRIME
SBS Chr2 4835120 G-C Homo INTERGENIC
SBS Chr3 20295877 G-A Hetero INTERGENIC
SBS Chr3 29098471 C-T Hetero UTR_3_PRIME
SBS Chr4 501827 A-T Hetero INTERGENIC
SBS Chr4 16731221 C-T Hetero INTRON
SBS Chr4 16833395 C-T Hetero INTERGENIC
SBS Chr4 18979984 C-T Hetero INTERGENIC
SBS Chr4 26032978 C-G Hetero INTERGENIC
SBS Chr4 26314382 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g187800
SBS Chr4 26984521 T-G Hetero INTRON
SBS Chr4 27381176 C-T Hetero INTERGENIC
SBS Chr4 32232810 A-G Hetero INTERGENIC
SBS Chr4 35024205 G-A Homo INTERGENIC
SBS Chr5 4171849 C-T Homo INTERGENIC
SBS Chr5 29521250 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g280500
SBS Chr6 9586724 C-T Hetero INTERGENIC
SBS Chr7 4081282 C-T Hetero INTERGENIC
SBS Chr7 22979293 A-G Homo INTERGENIC
SBS Chr7 29058414 T-C Hetero UTR_3_PRIME
SBS Chr8 1825854 G-T Hetero UTR_3_PRIME
SBS Chr8 11834598 T-A Homo INTERGENIC
SBS Chr8 11834604 A-G Homo INTERGENIC
SBS Chr8 17885836 C-A Hetero INTERGENIC
SBS Chr8 26273843 C-A Hetero INTERGENIC
SBS Chr9 11651245 C-T Hetero INTERGENIC
SBS Chr9 21489320 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g187900
SBS Chr11 16734711 T-C Homo INTERGENIC
SBS Chr12 4725650 T-C Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21071 21073 2
Deletion Chr3 5827168 5827190 22
Deletion Chr11 7886039 7886040 1
Deletion Chr8 8984370 8984372 2 OsKitaake08g082000
Deletion Chr2 10214144 10214163 19
Deletion Chr8 11839773 11839786 13
Deletion Chr11 12132218 12132234 16
Deletion Chr1 14743196 14743205 9
Deletion Chr3 15270636 15270637 1
Deletion Chr6 15739762 15739764 2
Deletion Chr6 15888107 15888113 6
Deletion Chr2 20008100 20008107 7 OsKitaake02g194800
Deletion Chr6 20594109 20594130 21
Deletion Chr10 22837094 22837098 4
Deletion Chr11 24817423 24817453 30
Deletion Chr12 25130110 25130124 14
Deletion Chr6 28479151 28479152 1
Deletion Chr7 29265418 29265530 112
Deletion Chr3 35691116 35691117 1
Deletion Chr3 36014201 36014202 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 27836531 27836534 2
Insertion Chr8 15843248 15843251 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12074266 12082920 OsKitaake09g077800
Inversion Chr9 12074278 12082930 OsKitaake09g077800
Inversion Chr2 33661038 33946168 OsKitaake02g348000
Inversion Chr2 33661047 33947651 OsKitaake02g348000

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4784484 Chr4 2796736
Translocation Chr2 33946249 Chr1 39777043 OsKitaake01g430200
Translocation Chr2 33947455 Chr1 39777040 OsKitaake01g430200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25730800	C-T	Homo	INTERGENIC
SBS	Chr1	27778243	C-T	Hetero	INTERGENIC
SBS	Chr2	4048942	A-G	Homo	UTR_3_PRIME
SBS	Chr2	4835120	G-C	Homo	INTERGENIC
SBS	Chr3	20295877	G-A	Hetero	INTERGENIC
SBS	Chr3	29098471	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	501827	A-T	Hetero	INTERGENIC
SBS	Chr4	16731221	C-T	Hetero	INTRON
SBS	Chr4	16833395	C-T	Hetero	INTERGENIC
SBS	Chr4	18979984	C-T	Hetero	INTERGENIC
SBS	Chr4	26032978	C-G	Hetero	INTERGENIC
SBS	Chr4	26314382	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g187800
SBS	Chr4	26984521	T-G	Hetero	INTRON
SBS	Chr4	27381176	C-T	Hetero	INTERGENIC
SBS	Chr4	32232810	A-G	Hetero	INTERGENIC
SBS	Chr4	35024205	G-A	Homo	INTERGENIC
SBS	Chr5	4171849	C-T	Homo	INTERGENIC
SBS	Chr5	29521250	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g280500
SBS	Chr6	9586724	C-T	Hetero	INTERGENIC
SBS	Chr7	4081282	C-T	Hetero	INTERGENIC
SBS	Chr7	22979293	A-G	Homo	INTERGENIC
SBS	Chr7	29058414	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	1825854	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	11834598	T-A	Homo	INTERGENIC
SBS	Chr8	11834604	A-G	Homo	INTERGENIC
SBS	Chr8	17885836	C-A	Hetero	INTERGENIC
SBS	Chr8	26273843	C-A	Hetero	INTERGENIC
SBS	Chr9	11651245	C-T	Hetero	INTERGENIC
SBS	Chr9	21489320	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g187900
SBS	Chr11	16734711	T-C	Homo	INTERGENIC
SBS	Chr12	4725650	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21071	21073	2
Deletion	Chr3	5827168	5827190	22
Deletion	Chr11	7886039	7886040	1
Deletion	Chr8	8984370	8984372	2	OsKitaake08g082000
Deletion	Chr2	10214144	10214163	19
Deletion	Chr8	11839773	11839786	13
Deletion	Chr11	12132218	12132234	16
Deletion	Chr1	14743196	14743205	9
Deletion	Chr3	15270636	15270637	1
Deletion	Chr6	15739762	15739764	2
Deletion	Chr6	15888107	15888113	6
Deletion	Chr2	20008100	20008107	7	OsKitaake02g194800
Deletion	Chr6	20594109	20594130	21
Deletion	Chr10	22837094	22837098	4
Deletion	Chr11	24817423	24817453	30
Deletion	Chr12	25130110	25130124	14
Deletion	Chr6	28479151	28479152	1
Deletion	Chr7	29265418	29265530	112
Deletion	Chr3	35691116	35691117	1
Deletion	Chr3	36014201	36014202	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12074266	12082920	OsKitaake09g077800
Inversion	Chr9	12074278	12082930	OsKitaake09g077800
Inversion	Chr2	33661038	33946168	OsKitaake02g348000
Inversion	Chr2	33661047	33947651	OsKitaake02g348000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes