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Mutant Information

Mutant Name	FN903-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN903-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7989114 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g100100
SBS Chr1 25103072 T-C Hetero INTERGENIC
SBS Chr2 25592769 C-T Hetero INTRON
SBS Chr3 1310759 A-G Homo INTERGENIC
SBS Chr3 19764026 T-C Homo INTERGENIC
SBS Chr3 25052814 A-T Hetero INTERGENIC
SBS Chr3 27520149 T-A Hetero INTRON
SBS Chr4 20582794 A-T Hetero INTRON
SBS Chr4 33693750 G-A Hetero INTERGENIC
SBS Chr5 726671 C-A Homo INTERGENIC
SBS Chr5 4187092 G-A Hetero INTERGENIC
SBS Chr5 7564183 G-A Homo INTERGENIC
SBS Chr5 11512658 G-T Hetero INTERGENIC
SBS Chr5 17248734 T-A Hetero INTRON
SBS Chr6 18744274 C-T Homo INTERGENIC
SBS Chr6 25306994 G-A Hetero UTR_3_PRIME
SBS Chr6 26099910 G-A Hetero INTERGENIC
SBS Chr6 30164953 C-A Hetero INTERGENIC
SBS Chr7 13458705 T-A Hetero INTERGENIC
SBS Chr7 22683320 A-G Homo INTRON
SBS Chr8 5277676 C-T Hetero INTERGENIC
SBS Chr9 7616573 C-T Hetero INTERGENIC
SBS Chr10 21086292 T-C Homo INTERGENIC
SBS Chr11 12595446 G-T Homo INTERGENIC
SBS Chr12 3168832 T-A Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 14253 14254 1
Deletion Chr6 223169 223172 3 OsKitaake06g001200
Deletion Chr12 840001 969000 128999 29
Deletion Chr2 1486234 1486238 4
Deletion Chr4 1880230 1880245 15
Deletion Chr8 1887183 1887191 8
Deletion Chr9 2429329 2429331 2
Deletion Chr2 2944497 2944501 4
Deletion Chr3 3143398 3143577 179
Deletion Chr1 3618833 3618841 8
Deletion Chr12 4315340 4315341 1
Deletion Chr5 4701724 4701730 6
Deletion Chr12 6869300 6869305 5
Deletion Chr12 7889383 7889384 1
Deletion Chr2 9190927 9190945 18
Deletion Chr1 9445844 9445852 8
Deletion Chr5 12541194 12541679 485
Deletion Chr7 13800589 13800590 1
Deletion Chr7 15198645 15198647 2
Deletion Chr1 17183973 17184127 154
Deletion Chr1 17329949 17329957 8
Deletion Chr5 20965420 20965425 5
Deletion Chr7 24022624 24022627 3
Deletion Chr5 27674392 27674395 3
Deletion Chr3 31482812 31482821 9
Deletion Chr2 34285310 34285316 6

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34732481 34732484 2
Insertion Chr7 17623716 17623720 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 971981 1300550 OsKitaake12g014200
Inversion Chr2 2174712 2187441 OsKitaake02g033000
Inversion Chr2 2174750 2187465 OsKitaake02g033000
Inversion Chr4 20839828 20928952 2
Inversion Chr4 20839834 20928948 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 968893 Chr2 15775825 OsKitaake12g014100
Translocation Chr12 971911 Chr2 17196853 OsKitaake12g014200
Translocation Chr8 10221552 Chr1 18011868
Translocation Chr10 14913929 Chr1 9369939 OsKitaake10g093200
Translocation Chr10 14913933 Chr1 9369336 OsKitaake10g093200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7989114	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g100100
SBS	Chr1	25103072	T-C	Hetero	INTERGENIC
SBS	Chr2	25592769	C-T	Hetero	INTRON
SBS	Chr3	1310759	A-G	Homo	INTERGENIC
SBS	Chr3	19764026	T-C	Homo	INTERGENIC
SBS	Chr3	25052814	A-T	Hetero	INTERGENIC
SBS	Chr3	27520149	T-A	Hetero	INTRON
SBS	Chr4	20582794	A-T	Hetero	INTRON
SBS	Chr4	33693750	G-A	Hetero	INTERGENIC
SBS	Chr5	726671	C-A	Homo	INTERGENIC
SBS	Chr5	4187092	G-A	Hetero	INTERGENIC
SBS	Chr5	7564183	G-A	Homo	INTERGENIC
SBS	Chr5	11512658	G-T	Hetero	INTERGENIC
SBS	Chr5	17248734	T-A	Hetero	INTRON
SBS	Chr6	18744274	C-T	Homo	INTERGENIC
SBS	Chr6	25306994	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	26099910	G-A	Hetero	INTERGENIC
SBS	Chr6	30164953	C-A	Hetero	INTERGENIC
SBS	Chr7	13458705	T-A	Hetero	INTERGENIC
SBS	Chr7	22683320	A-G	Homo	INTRON
SBS	Chr8	5277676	C-T	Hetero	INTERGENIC
SBS	Chr9	7616573	C-T	Hetero	INTERGENIC
SBS	Chr10	21086292	T-C	Homo	INTERGENIC
SBS	Chr11	12595446	G-T	Homo	INTERGENIC
SBS	Chr12	3168832	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	14253	14254	1
Deletion	Chr6	223169	223172	3	OsKitaake06g001200
Deletion	Chr12	840001	969000	128999	29
Deletion	Chr2	1486234	1486238	4
Deletion	Chr4	1880230	1880245	15
Deletion	Chr8	1887183	1887191	8
Deletion	Chr9	2429329	2429331	2
Deletion	Chr2	2944497	2944501	4
Deletion	Chr3	3143398	3143577	179
Deletion	Chr1	3618833	3618841	8
Deletion	Chr12	4315340	4315341	1
Deletion	Chr5	4701724	4701730	6
Deletion	Chr12	6869300	6869305	5
Deletion	Chr12	7889383	7889384	1
Deletion	Chr2	9190927	9190945	18
Deletion	Chr1	9445844	9445852	8
Deletion	Chr5	12541194	12541679	485
Deletion	Chr7	13800589	13800590	1
Deletion	Chr7	15198645	15198647	2
Deletion	Chr1	17183973	17184127	154
Deletion	Chr1	17329949	17329957	8
Deletion	Chr5	20965420	20965425	5
Deletion	Chr7	24022624	24022627	3
Deletion	Chr5	27674392	27674395	3
Deletion	Chr3	31482812	31482821	9
Deletion	Chr2	34285310	34285316	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	971981	1300550	OsKitaake12g014200
Inversion	Chr2	2174712	2187441	OsKitaake02g033000
Inversion	Chr2	2174750	2187465	OsKitaake02g033000
Inversion	Chr4	20839828	20928952	2
Inversion	Chr4	20839834	20928948	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes