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Mutant Information |
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Mutant Name | FN906-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN906-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 9026073 | A-G | Homo | INTERGENIC | |
SBS | Chr1 | 9986116 | T-A | Homo | INTERGENIC | |
SBS | Chr1 | 13682555 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 14929410 | A-G | Homo | INTERGENIC | |
SBS | Chr2 | 8120983 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 14701600 | G-A | Homo | INTERGENIC | |
SBS | Chr2 | 19308860 | G-T | Hetero | INTERGENIC | |
SBS | Chr2 | 19308861 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 336128 | G-C | Hetero | INTERGENIC | |
SBS | Chr3 | 12782709 | T-C | Hetero | INTERGENIC | |
SBS | Chr3 | 19324427 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 3102229 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 16360681 | C-G | Homo | INTERGENIC | |
SBS | Chr4 | 16512843 | C-G | Hetero | INTERGENIC | |
SBS | Chr4 | 17999985 | C-A | Hetero | INTERGENIC | |
SBS | Chr4 | 20666178 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 23162181 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 23529149 | C-T | Homo | SYNONYMOUS_CODING | |
SBS | Chr4 | 25098543 | T-C | Homo | UTR_5_PRIME | |
SBS | Chr6 | 12833494 | C-A | Hetero | INTERGENIC | |
SBS | Chr6 | 23794396 | G-A | Hetero | INTERGENIC | |
SBS | Chr7 | 11477924 | C-A | Hetero | INTERGENIC | |
SBS | Chr7 | 13154562 | T-C | Hetero | INTERGENIC | |
SBS | Chr8 | 19183332 | C-T | Hetero | INTERGENIC | |
SBS | Chr9 | 15389394 | G-A | Hetero | INTERGENIC | |
SBS | Chr10 | 1995524 | C-T | Hetero | INTERGENIC | |
SBS | Chr10 | 3994191 | G-A | Hetero | INTERGENIC | |
SBS | Chr11 | 3633632 | G-A | Hetero | UTR_5_PRIME | |
SBS | Chr11 | 6351248 | T-A | Hetero | INTRON | |
SBS | Chr11 | 6351249 | C-A | Hetero | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr10 | 4767615 | 4767618 | 3 | |
Deletion | Chr11 | 7308835 | 7308837 | 2 | |
Deletion | Chr9 | 7681598 | 7681708 | 110 | |
Deletion | Chr5 | 9125505 | 9125511 | 6 | |
Deletion | Chr6 | 9600927 | 9600931 | 4 | OsKitaake06g113100 |
Deletion | Chr2 | 13171887 | 13171889 | 2 | |
Deletion | Chr1 | 14891001 | 14930000 | 38999 | 2 |
Deletion | Chr10 | 14943770 | 14943776 | 6 | |
Deletion | Chr3 | 16273444 | 16273453 | 9 | OsKitaake03g207000 |
Deletion | Chr11 | 19671666 | 19671667 | 1 | |
Deletion | Chr3 | 20276938 | 20276941 | 3 | |
Deletion | Chr3 | 22317181 | 22317182 | 1 | |
Deletion | Chr5 | 25262011 | 25262012 | 1 | |
Deletion | Chr3 | 31481801 | 31481805 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr6 | 7113038 | 7113043 | 4 | |
Insertion | Chr9 | 20842599 | 20842602 | 2 | |
Insertion | Chr5 | 30226856 | 30226864 | 7 |